Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NQZ98_RS04855 Genome accession   NZ_CP102135
Coordinates   954556..955782 (+) Length   408 a.a.
NCBI ID   WP_002934974.1    Uniprot ID   A0A0H3MZQ3
Organism   Streptococcus suis strain M106471_S40     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 949556..960782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS04825 (NQZ98_04825) - 950514..950849 (+) 336 WP_171997307.1 hypothetical protein -
  NQZ98_RS04830 (NQZ98_04830) - 950941..951900 (+) 960 WP_024390350.1 ROK family glucokinase -
  NQZ98_RS04835 (NQZ98_04835) - 952026..952304 (+) 279 WP_024381822.1 hypothetical protein -
  NQZ98_RS04840 (NQZ98_04840) - 952316..952618 (+) 303 WP_044678163.1 hypothetical protein -
  NQZ98_RS04845 (NQZ98_04845) - 952671..953510 (+) 840 WP_024396052.1 thymidylate synthase -
  NQZ98_RS04850 (NQZ98_04850) - 953846..954358 (+) 513 WP_171997308.1 dihydrofolate reductase -
  NQZ98_RS04855 (NQZ98_04855) clpX 954556..955782 (+) 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NQZ98_RS04860 (NQZ98_04860) yihA 955838..956425 (+) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NQZ98_RS04865 (NQZ98_04865) ndk 956448..956861 (+) 414 WP_024380696.1 nucleoside-diphosphate kinase -
  NQZ98_RS04870 (NQZ98_04870) lepA 956957..958789 (+) 1833 WP_002943192.1 translation elongation factor 4 -
  NQZ98_RS04875 (NQZ98_04875) - 958839..959021 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  NQZ98_RS04880 (NQZ98_04880) - 959156..960463 (+) 1308 WP_024400559.1 excalibur calcium-binding domain-containing protein -
  NQZ98_RS04885 (NQZ98_04885) - 960525..960749 (+) 225 WP_024400560.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45318.84 Da        Isoelectric Point: 4.6382

>NTDB_id=614797 NQZ98_RS04855 WP_002934974.1 954556..955782(+) (clpX) [Streptococcus suis strain M106471_S40]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=614797 NQZ98_RS04855 WP_002934974.1 954556..955782(+) (clpX) [Streptococcus suis strain M106471_S40]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGAAACAATGTCTTCATTTGTAATGAATGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTAGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTATGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCCGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATTGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAATCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATTGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MZQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574