Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NQZ84_RS10560 Genome accession   NZ_CP102094
Coordinates   2184979..2186073 (+) Length   364 a.a.
NCBI ID   WP_257049401.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2179979..2191073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10535 (NQZ84_10535) pgsA 2180498..2181037 (-) 540 WP_014736596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQZ84_RS10540 (NQZ84_10540) rodZ 2181047..2181904 (-) 858 WP_024395962.1 cytoskeleton protein RodZ -
  NQZ84_RS10545 (NQZ84_10545) yfmH 2181986..2183269 (-) 1284 WP_044673836.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NQZ84_RS10550 (NQZ84_10550) yfmF 2183266..2184519 (-) 1254 WP_044673839.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  NQZ84_RS10555 (NQZ84_10555) yaaA 2184593..2184976 (+) 384 WP_044673841.1 S4 domain-containing protein YaaA -
  NQZ84_RS10560 (NQZ84_10560) recF 2184979..2186073 (+) 1095 WP_257049401.1 DNA replication/repair protein RecF Machinery gene
  NQZ84_RS10565 (NQZ84_10565) guaB 2186145..2187626 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  NQZ84_RS10570 (NQZ84_10570) trpS 2187858..2188883 (-) 1026 WP_044768804.1 tryptophan--tRNA ligase -
  NQZ84_RS10575 (NQZ84_10575) - 2189238..2190110 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42189.28 Da        Isoelectric Point: 7.0555

>NTDB_id=614745 NQZ84_RS10560 WP_257049401.1 2184979..2186073(+) (recF) [Streptococcus suis strain 12RC1]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNQEELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=614745 NQZ84_RS10560 WP_257049401.1 2184979..2186073(+) (recF) [Streptococcus suis strain 12RC1]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAAT
TCATCGATGTCGAGCTAGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTCTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCAGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAACTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACGGGAGTTGGACCACATCGAGATGATGTAGCCTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442