Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   NQZ84_RS10095 Genome accession   NZ_CP102094
Coordinates   2090890..2091711 (-) Length   273 a.a.
NCBI ID   WP_079396237.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 2085890..2096711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10065 (NQZ84_10065) - 2086733..2087503 (-) 771 WP_044691918.1 metal ABC transporter ATP-binding protein -
  NQZ84_RS10070 (NQZ84_10070) - 2087546..2087800 (+) 255 WP_228477532.1 hypothetical protein -
  NQZ84_RS10075 (NQZ84_10075) - 2088056..2088979 (-) 924 WP_105124019.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  NQZ84_RS10080 (NQZ84_10080) - 2089105..2089764 (+) 660 WP_044755962.1 metal-dependent transcriptional regulator -
  NQZ84_RS10085 (NQZ84_10085) - 2089778..2090053 (-) 276 WP_257047655.1 hypothetical protein -
  NQZ84_RS10090 (NQZ84_10090) - 2090151..2090825 (-) 675 WP_024407685.1 CPBP family intramembrane glutamic endopeptidase -
  NQZ84_RS10095 (NQZ84_10095) comE/blpR 2090890..2091711 (-) 822 WP_079396237.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  NQZ84_RS10100 (NQZ84_10100) - 2091928..2092071 (-) 144 WP_044674672.1 putative holin-like toxin -
  NQZ84_RS10105 (NQZ84_10105) - 2092184..2092369 (-) 186 WP_013730652.1 hypothetical protein -
  NQZ84_RS10110 (NQZ84_10110) dtd 2092446..2092889 (-) 444 WP_044674671.1 D-aminoacyl-tRNA deacylase -
  NQZ84_RS10115 (NQZ84_10115) - 2092891..2095092 (-) 2202 WP_014636726.1 RelA/SpoT family protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 31520.10 Da        Isoelectric Point: 5.3562

>NTDB_id=614740 NQZ84_RS10095 WP_079396237.1 2090890..2091711(-) (comE/blpR) [Streptococcus suis strain 12RC1]
MLNIFVLEDDFFQQSRLENAIRQCVEETSVRYKFLEVFGKPNQLLESIEEAGNHQFFFLDIEIKGEEKKGMEIAKEIRAR
DPYAVIVFVTTHSEFMPVTYRYRVSALDFIDKGLEDSDFQKAVSDVLVHAFENIDYTIAENSFIYKTETAHIQVPFSDIL
YFETSSTIHKVILKTKTGQTEFYGKVSDIAKADERLYQAHRSCVVNPLNISVLITAVLFAFVHSYEISLSFWSALFPGFL
FSWIYYKTNHLKYPIVAHILSNSIVTILNVISV

Nucleotide


Download         Length: 822 bp        

>NTDB_id=614740 NQZ84_RS10095 WP_079396237.1 2090890..2091711(-) (comE/blpR) [Streptococcus suis strain 12RC1]
ATGCTTAATATTTTTGTATTAGAAGATGATTTTTTTCAGCAGAGCAGGCTAGAAAATGCTATTAGGCAGTGTGTTGAAGA
AACGTCAGTAAGATATAAATTCCTAGAAGTTTTTGGTAAACCAAATCAGTTATTGGAATCAATTGAGGAAGCGGGGAATC
ACCAATTTTTCTTTTTAGATATTGAAATAAAAGGAGAAGAAAAGAAAGGAATGGAAATCGCTAAAGAAATCCGTGCTCGC
GATCCCTATGCTGTTATTGTCTTTGTAACAACTCACTCAGAATTTATGCCGGTAACATATCGTTATCGGGTTTCTGCTTT
AGATTTTATAGATAAAGGCCTGGAGGATAGTGACTTTCAAAAGGCAGTATCAGATGTCTTAGTGCATGCTTTTGAAAATA
TTGATTATACTATAGCTGAAAATTCTTTTATATACAAAACTGAAACAGCTCATATTCAAGTCCCTTTTAGTGATATCCTT
TATTTTGAAACATCATCAACAATACATAAAGTCATTTTAAAAACCAAAACAGGTCAGACTGAGTTTTACGGGAAAGTATC
CGATATAGCGAAAGCTGACGAACGACTTTACCAGGCACATCGTTCTTGTGTAGTGAATCCATTAAATATTAGCGTGTTAA
TTACAGCCGTTTTATTTGCTTTTGTACATAGTTATGAAATTTCTTTGAGTTTCTGGTCGGCACTTTTTCCAGGATTTTTG
TTTTCTTGGATTTACTATAAAACGAACCATCTCAAATATCCGATAGTGGCACATATCTTGTCGAACAGTATTGTGACCAT
TTTAAATGTTATAAGTGTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

56.132

77.656

0.436

  comE/comE1 Streptococcus equinus JB1

48.815

77.289

0.377