Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LG319_RS08460 Genome accession   NZ_CP085027
Coordinates   1709569..1710153 (+) Length   194 a.a.
NCBI ID   WP_011276196.1    Uniprot ID   A0A2A1KAP4
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704569..1715153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS08430 (LG319_08390) - 1705327..1706694 (-) 1368 WP_053024324.1 isochorismate synthase -
  LG319_RS08435 (LG319_08395) - 1706874..1707812 (+) 939 WP_037549220.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LG319_RS08440 (LG319_08400) - 1707909..1708463 (-) 555 WP_053024323.1 GNAT family N-acetyltransferase -
  LG319_RS08445 (LG319_08405) - 1708648..1708878 (+) 231 WP_037549201.1 NINE protein -
  LG319_RS08450 (LG319_08410) - 1708958..1709059 (+) 102 WP_011276194.1 SAR1012 family small protein -
  LG319_RS08455 (LG319_08415) - 1709136..1709354 (-) 219 WP_037549198.1 IDEAL domain-containing protein -
  LG319_RS08460 (LG319_08420) comK/comK1 1709569..1710153 (+) 585 WP_011276196.1 competence protein ComK Regulator
  LG319_RS08475 (LG319_08435) - 1710733..1711284 (+) 552 WP_053024322.1 Ltp family lipoprotein -
  LG319_RS08480 (LG319_08440) - 1711331..1712320 (-) 990 WP_053024321.1 lipoate--protein ligase -
  LG319_RS08485 (LG319_08445) - 1712521..1712697 (+) 177 WP_011276202.1 DUF2187 family protein -
  LG319_RS08490 (LG319_08450) - 1712714..1713316 (+) 603 WP_053024320.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LG319_RS08495 (LG319_08455) - 1713400..1714911 (-) 1512 WP_037549135.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 23002.43 Da        Isoelectric Point: 9.2942

>NTDB_id=614732 LG319_RS08460 WP_011276196.1 1709569..1710153(+) (comK/comK1) [Staphylococcus haemolyticus strain SLM-175]
MTNISQSQNTVYIIRKGDMIIKPVIDDYEQTKGSEIWKYDSTIVSSPFKTQKIVERSCKFYGNSYISKKSETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENMWINMHYVHEIKPLKNRKCKIIFANHQTLTLNVSYHSIWHQYSNCIFYYYMVDKQ
SRMKSNNPEMPIDYEKTTLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=614732 LG319_RS08460 WP_011276196.1 1709569..1710153(+) (comK/comK1) [Staphylococcus haemolyticus strain SLM-175]
ATGACAAATATTTCTCAAAGCCAAAATACTGTATATATTATTCGAAAAGGAGATATGATAATCAAACCCGTCATTGATGA
TTATGAGCAAACAAAAGGATCTGAAATATGGAAATATGATTCCACAATAGTTTCAAGCCCTTTCAAAACTCAAAAAATCG
TTGAACGCTCATGTAAATTTTATGGTAATAGCTATATTAGTAAGAAATCCGAAACACAACGAATTGCCGGCATTACTAGT
AAACCACCTATTTTATTGACTCCTCTCTTCCCCACTTATTTTTTCCCTACGCATTCAGACCGTTTAGAAGAAAACATGTG
GATAAATATGCATTATGTACATGAAATTAAGCCTCTTAAAAATCGAAAATGTAAAATTATTTTTGCAAATCATCAAACAT
TAACACTTAATGTTTCCTACCACAGTATTTGGCACCAATACTCTAACTGCATTTTTTATTATTACATGGTCGATAAACAA
TCTCGTATGAAGTCAAACAATCCAGAAATGCCAATTGATTATGAAAAAACGACTTTAAATATTTTCGAAGCACTTTCACA
TTATTCACTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1KAP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

68.617

96.907

0.665
  comK/comK1 Staphylococcus aureus N315

68.617

96.907

0.665