Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NQZ84_RS08770 Genome accession   NZ_CP102094
Coordinates   1791575..1792615 (-) Length   346 a.a.
NCBI ID   WP_257047550.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786575..1797615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10720 - 1787409..1787526 (-) 118 Protein_1687 translation initiation factor IF-2 N-terminal domain-containing protein -
  NQZ84_RS08740 (NQZ84_08740) - 1787544..1787852 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  NQZ84_RS08745 (NQZ84_08745) rnpM 1787839..1788135 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  NQZ84_RS08750 (NQZ84_08750) nusA 1788152..1789294 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  NQZ84_RS08755 (NQZ84_08755) rimP 1789368..1789838 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  NQZ84_RS08760 (NQZ84_08760) trmB 1790096..1790734 (-) 639 WP_044668812.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQZ84_RS08765 (NQZ84_08765) ccrZ 1790731..1791525 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  NQZ84_RS08770 (NQZ84_08770) pptB 1791575..1792615 (-) 1041 WP_257047550.1 ABC transporter permease Regulator
  NQZ84_RS08775 (NQZ84_08775) pptA 1792612..1793346 (-) 735 WP_024408312.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS08780 (NQZ84_08780) - 1793409..1793822 (+) 414 WP_024386232.1 HIT family protein -
  NQZ84_RS08785 (NQZ84_08785) - 1793824..1794126 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  NQZ84_RS08790 (NQZ84_08790) - 1794235..1795428 (-) 1194 WP_044668818.1 LCP family protein -
  NQZ84_RS08795 (NQZ84_08795) - 1795425..1795952 (-) 528 WP_044692724.1 GNAT family N-acetyltransferase -
  NQZ84_RS08800 (NQZ84_08800) tsaE 1795945..1796385 (-) 441 WP_079397976.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40109.48 Da        Isoelectric Point: 10.1838

>NTDB_id=614729 NQZ84_RS08770 WP_257047550.1 1791575..1792615(-) (pptB) [Streptococcus suis strain 12RC1]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLGKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=614729 NQZ84_RS08770 WP_257047550.1 1791575..1792615(-) (pptB) [Streptococcus suis strain 12RC1]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCTGGAAGAATTGCGACCTATCTAGAAGAA
GCAGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGGGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(153-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468
  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462