Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG319_RS07335 Genome accession   NZ_CP085027
Coordinates   1467220..1468266 (-) Length   348 a.a.
NCBI ID   WP_037551602.1    Uniprot ID   A0A2K0A8F0
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462220..1473266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS07320 (LG319_07285) - 1463820..1464614 (-) 795 WP_053024911.1 TIGR00282 family metallophosphoesterase -
  LG319_RS07325 (LG319_07290) - 1464774..1464989 (+) 216 WP_037537291.1 hypothetical protein -
  LG319_RS07330 (LG319_07295) rny 1465274..1466833 (-) 1560 WP_011275913.1 ribonuclease Y -
  LG319_RS07335 (LG319_07300) recA 1467220..1468266 (-) 1047 WP_037551602.1 recombinase RecA Machinery gene
  LG319_RS07340 (LG319_07305) - 1468442..1469584 (-) 1143 WP_053024924.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  LG319_RS07345 (LG319_07310) pgsA 1469739..1470314 (-) 576 WP_053024910.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG319_RS07350 (LG319_07315) - 1470348..1470740 (-) 393 WP_053024909.1 RodZ family helix-turn-helix domain-containing protein -
  LG319_RS07355 (LG319_07320) - 1470762..1471592 (-) 831 WP_037551607.1 YmfK family protein -
  LG319_RS07360 (LG319_07325) ymfI 1471766..1472470 (-) 705 WP_037551608.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37811.71 Da        Isoelectric Point: 4.9284

>NTDB_id=614729 LG319_RS07335 WP_037551602.1 1467220..1468266(-) (recA) [Staphylococcus haemolyticus strain SLM-175]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQVKEEIDR
KLREKLGIFDGDVDEKEEDAPQTLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=614729 LG319_RS07335 WP_037551602.1 1467220..1468266(-) (recA) [Staphylococcus haemolyticus strain SLM-175]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTTATGAA
ACTAGGCGATAATAAAGGACGCCGTGTTTCAAGTGTTTCAAGTGGTTCAGTTACATTAGATAACGCACTAGGTGTAGGTG
GATATCCTAAAGGTAGAATTATAGAGATTTATGGACCAGAAAGTTCTGGTAAAACAACAGTAGCTTTACATGCTATTGCA
GAGGTACAAAAGAACGGTGGCGTTGCTGCATTTATCGATGCCGAACACGCACTTGATCCGGTATATGCAGAAGCATTAGG
TGTAGATATTGATAATTTGTATCTATCACAACCAGACCATGGTGAACAGGGGTTAGAGATTGCTGAAGCTTTCGTTCGAA
GTGGTGCGGTTGATATTGTAGTAGTTGACTCTGTTGCTGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGCGAT
ACGCATGTAGGACTTCAAGCTCGCTTAATGTCACAGGCGTTACGTAAATTATCTGGTGCAATTTCAAAATCAAATACAAC
AGCCATTTTCATTAATCAAATTCGTGAAAAAGTTGGTGTAATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAGCAGTTAAAACAAGGCCAAGAAATTGTTGGTAACAGA
ACTAAAATTAAAGTTGTCAAAAACAAAGTTGCACCACCTTTTAGAGTCGCTGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAAGAAGGTGAATTGATTGATCTTGGTGTTGAAAATGACATCGTAGATAAATCAGGTGCATGGTACTCATATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAATGTAAAAACATACCTTAAGGAAAATCCTCAAGTTAAAGAAGAAATCGATCGT
AAGTTACGAGAAAAACTCGGTATTTTCGATGGAGATGTTGATGAAAAAGAAGAAGATGCACCGCAAACCTTATTCGATGA
AGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K0A8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.678

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

70.381

97.989

0.69
  recA Streptococcus pyogenes NZ131

68.693

94.54

0.649
  recA Streptococcus mitis NCTC 12261

64.451

99.425

0.641
  recA Streptococcus mutans UA159

63.714

100

0.641
  recA Acinetobacter baumannii D1279779

64.08

100

0.641
  recA Neisseria gonorrhoeae MS11

63.977

99.713

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.977

99.713

0.638
  recA Neisseria gonorrhoeae MS11

63.977

99.713

0.638
  recA Streptococcus pneumoniae R6

66.366

95.69

0.635
  recA Streptococcus pneumoniae Rx1

66.366

95.69

0.635
  recA Streptococcus pneumoniae D39

66.366

95.69

0.635
  recA Streptococcus pneumoniae TIGR4

66.366

95.69

0.635
  recA Streptococcus mitis SK321

66.366

95.69

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

97.701

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.115

0.629
  recA Acinetobacter baylyi ADP1

66.564

93.678

0.624
  recA Helicobacter pylori 26695

65.549

94.253

0.618
  recA Helicobacter pylori strain NCTC11637

65.244

94.253

0.615
  recA Vibrio cholerae strain A1552

65.337

93.678

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.678

0.612
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

95.115

0.589
  recA Pseudomonas stutzeri DSM 10701

62.27

93.678

0.583
  recA Glaesserella parasuis strain SC1401

61.3

92.816

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.805

0.557