Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG319_RS03905 Genome accession   NZ_CP085027
Coordinates   787212..787610 (+) Length   132 a.a.
NCBI ID   WP_011275249.1    Uniprot ID   A0A5B2YX53
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 782212..792610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS03875 (LG319_03860) atpD 782488..783900 (+) 1413 WP_053025288.1 F0F1 ATP synthase subunit beta -
  LG319_RS03880 (LG319_03865) - 783921..784322 (+) 402 WP_053025287.1 F0F1 ATP synthase subunit epsilon -
  LG319_RS03885 (LG319_03870) - 784450..784683 (+) 234 WP_011275245.1 DUF1146 family protein -
  LG319_RS03890 (LG319_03875) murA 784788..786053 (+) 1266 WP_016931214.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LG319_RS03895 (LG319_03880) fabZ 786093..786530 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LG319_RS03900 (LG319_03885) - 786580..787023 (-) 444 WP_011275248.1 YwpF-like family protein -
  LG319_RS03905 (LG319_03890) ssb 787212..787610 (+) 399 WP_011275249.1 single-stranded DNA-binding protein Machinery gene
  LG319_RS03910 (LG319_03895) - 787948..788655 (+) 708 WP_053025537.1 transglycosylase family protein -
  LG319_RS03915 (LG319_03900) tenA 788943..789632 (+) 690 WP_053025535.1 thiaminase II -
  LG319_RS03920 (LG319_03905) thiD 789625..790446 (+) 822 WP_053025534.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LG319_RS03925 (LG319_03910) thiM 790439..791230 (+) 792 WP_053025532.1 hydroxyethylthiazole kinase -
  LG319_RS03930 (LG319_03915) thiE 791232..791870 (+) 639 WP_053025530.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.05 Da        Isoelectric Point: 4.7942

>NTDB_id=614715 LG319_RS03905 WP_011275249.1 787212..787610(+) (ssb) [Staphylococcus haemolyticus strain SLM-175]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=614715 LG319_RS03905 WP_011275249.1 787212..787610(+) (ssb) [Staphylococcus haemolyticus strain SLM-175]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAAGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATATTCTTCCTAACACCTCATATGATGAAGATGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742