Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NQZ84_RS05310 Genome accession   NZ_CP102094
Coordinates   1080389..1082173 (-) Length   594 a.a.
NCBI ID   WP_257047392.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075389..1087173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS05290 (NQZ84_05290) - 1077352..1077510 (-) 159 WP_024400458.1 hypothetical protein -
  NQZ84_RS05295 (NQZ84_05295) obgE 1078042..1079355 (-) 1314 WP_257047389.1 GTPase ObgE -
  NQZ84_RS05300 (NQZ84_05300) - 1079561..1079689 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  NQZ84_RS05305 (NQZ84_05305) - 1079861..1080013 (-) 153 WP_171841484.1 hypothetical protein -
  NQZ84_RS05310 (NQZ84_05310) uvrC 1080389..1082173 (-) 1785 WP_257047392.1 excinuclease ABC subunit UvrC Machinery gene
  NQZ84_RS05315 (NQZ84_05315) - 1082412..1083155 (+) 744 WP_257047394.1 ABC transporter ATP-binding protein -
  NQZ84_RS05320 (NQZ84_05320) - 1083152..1084762 (+) 1611 WP_257047396.1 permease -
  NQZ84_RS05325 (NQZ84_05325) - 1084785..1085228 (-) 444 WP_002935466.1 VOC family protein -
  NQZ84_RS05330 (NQZ84_05330) ldcB 1085317..1086072 (-) 756 WP_257047398.1 LD-carboxypeptidase LdcB/DacB -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68333.50 Da        Isoelectric Point: 9.0582

>NTDB_id=614701 NQZ84_RS05310 WP_257047392.1 1080389..1082173(-) (uvrC) [Streptococcus suis strain 12RC1]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLLITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGDNMPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKVAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNHFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDSLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAELVKEKLKENQTV

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=614701 NQZ84_RS05310 WP_257047392.1 1080389..1082173(-) (uvrC) [Streptococcus suis strain 12RC1]
ATGAACGATTTGATCAAGCATAAATTGGAGTTACTACCAGATAGCCCTGGCTGTTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCCTGGTGTCAGAGATTGCCGACTTTGAATTTATCGTAACGGATTCTAATATCGAGGCCCTCTTGTTGGAAATCAAT
CTGATTCAGGAGAACAAGCCTCGCTATAACATCATGCTCAAGGATGACAAGTCCTATCCCTTTATCAAGATTACCAAGGA
ACGTCACCCACGGCTGCTCATTACACGACAGATTAAGAAGGACGGTGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCTCATGGAGACAATATGCCCAGCCTGTCTGACTATGACAAGATGGCCAAGGAAGT
TGCCCAGTTCTTGACAGGTCATGATGATAAGATTGTCAAGGAAGTTCAGGACAAGATGAAGGTGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATACCGGGATGTCCTTCAATCCATTTCCACCCTGCGGACTAAACAACGGGTTATGGCTCAT
GACTTGCAAAATCGAGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCACTTTCCCTACTATAATGATGCGGACGAAGATTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCCCAGCGTGGCGAGAAGAAGCAACTCATCAATTTGGCAACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTCCTGGAGAAAAATCTGGAGAAGACCTACGGTGCGGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTCGATAACTCCAACATCATGGGGACCAGTCCTGTGTCGGCTATGGTTGTC
TTTGAAAATGGGGTGCCTAATAAAAAGGAATACCGTAAGTACAAGATTAAGACGGTGGAGGGACCAGATGACTATGCTTC
CATGCGGGAAGTTTTGCAGCGGCGGTACAGTCGGGTACTGCGGGACAGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTTATCGAGCAGGAGTTGGGTATGTCCATACCAATTGCAGGTTTGCAG
AAGAATGATAAGCACCAGACCCACGAATTGCTTTTTGGTAATCCACTGGAAGTGGTGGAGTTACCCCGAAATTCTCAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCCATTGAGTTTCACCGTCAGGTTCGGTCTAAAAATT
CCTTCTCATCTAAATTGGATGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTCTGATGAAGCATTTCAAGTCCATT
GGCAATATCCAGTCAGCAAGTTTGCAGGAAATCGCAGAAGCTGGTGTACCGTATAAGGTGGCGGAGTTGGTCAAGGAGAA
GTTGAAGGAAAACCAAACGGTGTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.721

98.99

0.769
  uvrC Streptococcus pneumoniae R6

77.381

98.99

0.766
  uvrC Streptococcus pneumoniae D39

77.381

98.99

0.766