Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LG295_RS09720 Genome accession   NZ_CP085024
Coordinates   2031272..2031835 (-) Length   187 a.a.
NCBI ID   WP_107531518.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026272..2036835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS09690 (LG295_09700) - 2026526..2027878 (-) 1353 WP_325999605.1 isochorismate synthase -
  LG295_RS09695 (LG295_09705) - 2028065..2029003 (+) 939 WP_325999604.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LG295_RS09700 (LG295_09710) - 2029080..2029649 (-) 570 WP_107558666.1 GNAT family N-acetyltransferase -
  LG295_RS09705 (LG295_09715) - 2029831..2030043 (+) 213 WP_107531531.1 TM2 domain-containing protein -
  LG295_RS09720 (LG295_09730) comK/comK1 2031272..2031835 (-) 564 WP_107531518.1 competence protein ComK Regulator
  LG295_RS09725 (LG295_09735) - 2032089..2032307 (+) 219 WP_017722274.1 IDEAL domain-containing protein -
  LG295_RS09730 (LG295_09740) - 2032407..2033393 (-) 987 WP_107558605.1 lipoate--protein ligase -
  LG295_RS09735 (LG295_09745) - 2033593..2033778 (+) 186 WP_002483735.1 DUF2187 family protein -
  LG295_RS09740 (LG295_09750) - 2033784..2034386 (+) 603 WP_107531516.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LG295_RS09745 (LG295_09755) - 2034434..2035942 (-) 1509 WP_107531515.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21868.23 Da        Isoelectric Point: 9.5362

>NTDB_id=614699 LG295_RS09720 WP_107531518.1 2031272..2031835(-) (comK/comK1) [Staphylococcus pseudoxylosus strain SLM-183]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTIRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHHIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFEAK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=614699 LG295_RS09720 WP_107531518.1 2031272..2031835(-) (comK/comK1) [Staphylococcus pseudoxylosus strain SLM-183]
ATGATTCAACCGTACATTATTAAAAAAGGTGATATGGTTTTACAACCATGTAATTTAGCTACTGGACAATATGAAGGTAG
TTACTTGCTTAGGTATAAAGCTGACAGTCAAATTATTAAAGAACGTGTGTCTAAAATCATCGACCGTTCTTGTAGATTTT
ATGGTAGCAGTTATGTATTTAAAAAGGAAGATACTATACGTATTACCGGTATAAGTAGTAAACCACCTATTCTATTCACT
CCATTATTTCCCACGTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACTTGGATCAATATCCATTACGTACA
TCATATTAGACCGTTAAAAGAAAAGAAATGTAAAGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAATATTTCTGCTC
ATAGTATGCATCACCAATATTTAAATGGCATATATTATTATTACATGATGGATAGGGCGGCTAGAGTTGCTACATTTGAT
CCTGATTCGCCTATTGATTATACAAAACCACAATTAAATATATATGAAGCATTGGCAAAATATTCGTTATTTGAAGCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545