Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LG295_RS08440 Genome accession   NZ_CP085024
Coordinates   1770380..1771255 (-) Length   291 a.a.
NCBI ID   WP_107530584.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1738352..1804753 1770380..1771255 within 0


Gene organization within MGE regions


Location: 1738352..1804753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS08315 (LG295_08320) ribF 1738705..1739676 (-) 972 WP_318832928.1 riboflavin biosynthesis protein RibF -
  LG295_RS08320 (LG295_08325) truB 1739690..1740607 (-) 918 WP_318832929.1 tRNA pseudouridine(55) synthase TruB -
  LG295_RS08325 (LG295_08330) rbfA 1740868..1741215 (-) 348 WP_026113574.1 30S ribosome-binding factor RbfA -
  LG295_RS08330 (LG295_08335) - 1741846..1742718 (+) 873 WP_107531815.1 HTH domain-containing protein -
  LG295_RS08335 (LG295_08340) - 1743165..1744163 (-) 999 WP_107531814.1 hypothetical protein -
  LG295_RS08340 (LG295_08345) infB 1744561..1746669 (-) 2109 WP_325999015.1 translation initiation factor IF-2 -
  LG295_RS08345 (LG295_08350) - 1746674..1746991 (-) 318 WP_101094237.1 ribosomal L7Ae/L30e/S12e/Gadd45 family protein -
  LG295_RS08350 (LG295_08355) rnpM 1746988..1747272 (-) 285 WP_038678381.1 RNase P modulator RnpM -
  LG295_RS08355 (LG295_08360) nusA 1747290..1748462 (-) 1173 WP_107531925.1 transcription termination factor NusA -
  LG295_RS08360 (LG295_08365) rimP 1748486..1748953 (-) 468 WP_107531924.1 ribosome maturation factor RimP -
  LG295_RS08365 (LG295_08370) - 1749306..1753622 (-) 4317 WP_318832932.1 PolC-type DNA polymerase III -
  LG295_RS08370 (LG295_08375) - 1754034..1755734 (-) 1701 WP_107558050.1 proline--tRNA ligase -
  LG295_RS08375 (LG295_08380) rseP 1755755..1757041 (-) 1287 WP_318832933.1 RIP metalloprotease RseP -
  LG295_RS08380 (LG295_08385) - 1757436..1758218 (-) 783 WP_107530594.1 phosphatidate cytidylyltransferase -
  LG295_RS08385 (LG295_08390) - 1758236..1758997 (-) 762 WP_107530593.1 isoprenyl transferase -
  LG295_RS08390 (LG295_08395) frr 1759228..1759782 (-) 555 WP_107530592.1 ribosome recycling factor -
  LG295_RS08395 (LG295_08400) pyrH 1759800..1760522 (-) 723 WP_017724293.1 UMP kinase -
  LG295_RS08400 (LG295_08405) tsf 1760654..1761532 (-) 879 WP_017724292.1 translation elongation factor Ts -
  LG295_RS08405 (LG295_08410) rpsB 1761626..1762414 (-) 789 WP_318832934.1 30S ribosomal protein S2 -
  LG295_RS08410 (LG295_08415) codY 1762763..1763536 (-) 774 WP_017724290.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  LG295_RS08415 (LG295_08420) hslU 1763560..1764969 (-) 1410 WP_107530589.1 ATP-dependent protease ATPase subunit HslU -
  LG295_RS08420 (LG295_08425) hslV 1765111..1765653 (-) 543 WP_107530588.1 ATP-dependent protease subunit HslV -
  LG295_RS08425 (LG295_08430) xerC 1765657..1766547 (-) 891 WP_107530587.1 tyrosine recombinase XerC -
  LG295_RS08430 (LG295_08435) trmFO 1766666..1767973 (-) 1308 WP_107530586.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LG295_RS08435 (LG295_08440) topA 1768116..1770182 (-) 2067 WP_107530585.1 type I DNA topoisomerase -
  LG295_RS08440 (LG295_08445) dprA 1770380..1771255 (-) 876 WP_107530584.1 DNA-processing protein DprA Machinery gene
  LG295_RS08445 (LG295_08450) sucD 1771569..1772474 (-) 906 WP_107530583.1 succinate--CoA ligase subunit alpha -
  LG295_RS08450 (LG295_08455) sucC 1772496..1773662 (-) 1167 WP_107530582.1 ADP-forming succinate--CoA ligase subunit beta -
  LG295_RS08455 (LG295_08460) - 1773770..1774540 (-) 771 WP_107530581.1 ribonuclease HII -
  LG295_RS08460 (LG295_08465) ylqF 1774547..1775407 (-) 861 WP_107530580.1 ribosome biogenesis GTPase YlqF -
  LG295_RS08465 (LG295_08470) - 1775777..1778356 (+) 2580 WP_404475655.1 YfhO family protein -
  LG295_RS08470 (LG295_08475) - 1778398..1781031 (+) 2634 WP_326028904.1 YfhO family protein -
  LG295_RS08475 (LG295_08480) rplS 1781442..1781792 (-) 351 WP_002483481.1 50S ribosomal protein L19 -
  LG295_RS08480 (LG295_08485) trmD 1781895..1782632 (-) 738 WP_107530577.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LG295_RS08485 (LG295_08490) rimM 1782632..1783138 (-) 507 WP_107530576.1 ribosome maturation factor RimM -
  LG295_RS08490 (LG295_08495) rpsP 1783381..1783647 (-) 267 WP_107530575.1 30S ribosomal protein S16 -
  LG295_RS08495 (LG295_08500) - 1784077..1784829 (+) 753 WP_318832937.1 3-oxoacyl-ACP reductase -
  LG295_RS08500 (LG295_08505) - 1784851..1786152 (+) 1302 WP_107530598.1 LLM class flavin-dependent oxidoreductase -
  LG295_RS08505 (LG295_08510) ffh 1786605..1787972 (-) 1368 WP_017724272.1 signal recognition particle protein -
  LG295_RS08510 (LG295_08515) - 1787996..1788328 (-) 333 WP_107558060.1 putative DNA-binding protein -
  LG295_RS08515 (LG295_08520) ftsY 1788315..1789532 (-) 1218 WP_107530572.1 signal recognition particle-docking protein FtsY -
  LG295_RS08520 (LG295_08525) smc 1789529..1793098 (-) 3570 WP_318832938.1 chromosome segregation protein SMC -
  LG295_RS08525 (LG295_08530) rnc 1793247..1793951 (-) 705 WP_404476853.1 ribonuclease III -
  LG295_RS08530 (LG295_08535) - 1794220..1794450 (-) 231 WP_107531370.1 acyl carrier protein -
  LG295_RS08535 (LG295_08540) fabG 1794606..1795340 (-) 735 WP_122064839.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  LG295_RS08540 (LG295_08545) fabD 1795333..1796259 (-) 927 WP_107531372.1 ACP S-malonyltransferase -
  LG295_RS08545 (LG295_08550) plsX 1796252..1797238 (-) 987 WP_318832939.1 phosphate acyltransferase PlsX -
  LG295_RS08550 (LG295_08555) fapR 1797231..1797800 (-) 570 WP_107531374.1 transcription factor FapR -
  LG295_RS08555 (LG295_08560) - 1798272..1799831 (+) 1560 WP_107531375.1 M4 family metallopeptidase -
  LG295_RS08560 (LG295_08565) recG 1800013..1802058 (-) 2046 WP_326020132.1 ATP-dependent DNA helicase RecG -
  LG295_RS08565 (LG295_08570) sdaAA 1802061..1802930 (-) 870 WP_029377504.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  LG295_RS08570 (LG295_08575) sdaAB 1802943..1803608 (-) 666 WP_107531377.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33530.56 Da        Isoelectric Point: 9.2904

>NTDB_id=614698 LG295_RS08440 WP_107530584.1 1770380..1771255(-) (dprA) [Staphylococcus pseudoxylosus strain SLM-183]
MKEQLYLKLRFAGLTTRHLHQLFEFSPSFIYEHELEQNHTLKRFLTKIAITRKHIIYDNFLNLECEHIFKLLKQWHISYV
TIDSNTYPKLLREIHDPPFILFYKGNPTLMQSTRTLAIIGSRQATNYTRRTLETFFPNFKTENLIIISGLAKGADSIAHE
QTLKHNMGSIAVLGFGHNHHYPKETYAIRKQIESKGLVISEYLPTDGARKHYFPERNRLISGLSKGVFITESTVSSGTHI
TMDCALEQNREVYVLPGSIYNPMVQGNLVSAQEGAKIVVKACDILEDYRQS

Nucleotide


Download         Length: 876 bp        

>NTDB_id=614698 LG295_RS08440 WP_107530584.1 1770380..1771255(-) (dprA) [Staphylococcus pseudoxylosus strain SLM-183]
ATGAAAGAACAACTTTATTTAAAACTGAGATTTGCAGGGTTAACTACACGTCATTTACACCAACTATTTGAATTTTCACC
GTCATTTATATATGAACACGAATTAGAGCAGAATCATACCCTTAAAAGATTTTTAACAAAAATAGCAATAACTCGAAAAC
ACATCATTTATGACAATTTTTTAAATTTAGAGTGTGAACATATTTTCAAACTACTAAAGCAATGGCATATTAGTTATGTG
ACTATTGATTCCAATACTTATCCTAAATTATTACGTGAAATACATGATCCACCATTCATCCTTTTCTATAAAGGTAATCC
TACTTTAATGCAGTCTACGCGAACACTTGCTATTATCGGTTCGAGACAAGCTACTAATTATACTCGAAGAACACTAGAAA
CATTTTTTCCTAATTTTAAAACTGAGAATTTAATTATCATATCCGGTTTGGCTAAAGGAGCAGATAGCATAGCTCATGAG
CAAACACTGAAACATAATATGGGGTCGATTGCTGTATTAGGATTTGGTCATAACCATCATTATCCTAAAGAAACTTATGC
CATTCGAAAACAAATTGAGTCCAAAGGTTTAGTAATTAGTGAGTATTTACCAACAGATGGAGCTCGAAAACATTATTTTC
CCGAAAGAAATAGACTTATTAGCGGTCTTTCTAAGGGTGTTTTTATCACAGAATCCACTGTGAGTAGTGGGACACATATA
ACGATGGATTGTGCATTGGAACAAAATAGGGAAGTATATGTATTACCGGGATCTATATACAATCCTATGGTCCAAGGAAA
TTTAGTTAGCGCACAAGAAGGAGCAAAGATTGTTGTGAAGGCATGTGATATTTTAGAAGATTACCGTCAATCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

49.474

97.938

0.485
  dprA Staphylococcus aureus MW2

49.474

97.938

0.485