Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ84_RS05095 Genome accession   NZ_CP102094
Coordinates   1029486..1031222 (-) Length   578 a.a.
NCBI ID   WP_044681591.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024486..1036222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS05080 (NQZ84_05080) - 1025337..1026623 (-) 1287 WP_257047353.1 homoserine dehydrogenase -
  NQZ84_RS05085 (NQZ84_05085) - 1026728..1027651 (+) 924 WP_024390336.1 polysaccharide deacetylase family protein -
  NQZ84_RS05090 (NQZ84_05090) rcrQ 1027708..1029477 (-) 1770 WP_044674972.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS05095 (NQZ84_05095) rcrP 1029486..1031222 (-) 1737 WP_044681591.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS05100 (NQZ84_05100) - 1031298..1031540 (-) 243 WP_012028079.1 KH domain-containing protein -
  NQZ84_RS05105 (NQZ84_05105) rpsP 1031562..1031834 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ84_RS05110 (NQZ84_05110) - 1031959..1032267 (-) 309 WP_052506794.1 DUF4298 domain-containing protein -
  NQZ84_RS05115 (NQZ84_05115) pcp 1032267..1032914 (-) 648 WP_024379909.1 pyroglutamyl-peptidase I -
  NQZ84_RS05120 (NQZ84_05120) - 1032911..1033672 (-) 762 WP_044752139.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65104.41 Da        Isoelectric Point: 5.1991

>NTDB_id=614698 NQZ84_RS05095 WP_044681591.1 1029486..1031222(-) (rcrP) [Streptococcus suis strain 12RC1]
MNLIWTYLKKYPKWIALDLLGALLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKIDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=614698 NQZ84_RS05095 WP_044681591.1 1029486..1031222(-) (rcrP) [Streptococcus suis strain 12RC1]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTATTGTTTGTAGT
GGTAAACTTGGGCTTGCCAACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACGACCAATATCGTCAAAGATATTCGAAATGATTTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCTTGGACAGTAGCA
GTAGCCATGCCTTTTCTGGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAGAAACG
ATTGGATACTATCAACCAGTATGTTCGTGAAAATCTCATGGGTTTGCGGGTCATTCGTGCCTTTACACGTGAAGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTCA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTGACCTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATAGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCT
ATTGCACGTGCTATTGTGAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.776

100

0.394