Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LG295_RS05230 Genome accession   NZ_CP085024
Coordinates   1116525..1117154 (+) Length   209 a.a.
NCBI ID   WP_017723494.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111525..1122154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS05205 (LG295_05215) - 1112371..1113357 (-) 987 WP_107530774.1 aromatic acid exporter family protein -
  LG295_RS05210 (LG295_05220) map 1113534..1114286 (+) 753 WP_107557952.1 type I methionyl aminopeptidase -
  LG295_RS05215 (LG295_05225) - 1114391..1114777 (+) 387 WP_107530776.1 hypothetical protein -
  LG295_RS05220 (LG295_05230) liaF 1114794..1115495 (+) 702 WP_107530777.1 cell wall-active antibiotics response protein LiaF -
  LG295_RS05225 (LG295_05235) vraS 1115492..1116535 (+) 1044 WP_107557953.1 sensor histidine kinase Regulator
  LG295_RS05230 (LG295_05240) vraR 1116525..1117154 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  LG295_RS05235 (LG295_05245) - 1117425..1118570 (-) 1146 WP_107530779.1 YihY/virulence factor BrkB family protein -
  LG295_RS05240 (LG295_05250) - 1118927..1119211 (-) 285 WP_107555508.1 hypothetical protein -
  LG295_RS05245 (LG295_05255) - 1119218..1119682 (-) 465 WP_107557954.1 low molecular weight protein-tyrosine-phosphatase -
  LG295_RS05250 (LG295_05260) - 1119817..1120020 (+) 204 WP_107557955.1 DUF1128 family protein -
  LG295_RS05255 (LG295_05265) - 1120038..1121276 (+) 1239 WP_107530783.1 aminopeptidase -
  LG295_RS05260 (LG295_05270) - 1121365..1121886 (+) 522 WP_107557956.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.27 Da        Isoelectric Point: 4.7778

>NTDB_id=614683 LG295_RS05230 WP_017723494.1 1116525..1117154(+) (vraR) [Staphylococcus pseudoxylosus strain SLM-183]
MPIKVLFVDDHEMVRIGISSYLSTQPDIDVVGEGKSGKEAIEKAHQLNPDLILMDLLMDDMDGVEATEQVKKDLPHMKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=614683 LG295_RS05230 WP_017723494.1 1116525..1117154(+) (vraR) [Staphylococcus pseudoxylosus strain SLM-183]
ATGCCGATTAAAGTTTTATTTGTGGACGACCATGAAATGGTCCGAATTGGAATATCTAGCTATTTATCAACACAACCAGA
TATTGATGTTGTAGGAGAAGGGAAATCTGGAAAGGAAGCAATTGAAAAGGCGCACCAATTGAATCCAGATTTAATATTAA
TGGATTTGTTAATGGATGATATGGATGGTGTTGAAGCAACTGAACAAGTGAAAAAAGATTTACCTCATATGAAGGTAGTC
ATGCTTACGAGTTATATAGAAGATAACGAAGTATACCGTGCGCTTGATTCAGGTGTGGATAGCTACATTTTAAAAACAAC
AAGCGCTAGTGATATTGCAGAGGCAATAAGAAAAACTTATAACAATGAATCGGTTTTTGAAGCGGAAGTTTTAGTTAAGA
TGAGAAATAGGATGAAACAACGTGCAGAATTATATGAAATGTTAACAGAGCGTGAGATGGAAATCTTATTATTAATTGCA
AAAGGCTACTCAAATCAAGAAATAGCAAGTGCCTCACATATTACAATTAAAACCGTTAAAACACATGTAAGTAATATTTT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTTATTTACGCTTTTCAACACAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368