Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG337_RS04625 Genome accession   NZ_CP085021
Coordinates   994455..994874 (+) Length   139 a.a.
NCBI ID   WP_107555615.1    Uniprot ID   A0AAQ0S603
Organism   Staphylococcus pseudoxylosus strain WLG-405     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 989455..999874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG337_RS04595 (LG337_04590) atpD 989484..990896 (+) 1413 WP_017722094.1 F0F1 ATP synthase subunit beta -
  LG337_RS04600 (LG337_04595) - 990916..991320 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  LG337_RS04605 (LG337_04600) - 991673..991906 (+) 234 WP_107555613.1 DUF1146 family protein -
  LG337_RS04610 (LG337_04605) murA 992014..993279 (+) 1266 WP_122065106.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LG337_RS04615 (LG337_04610) fabZ 993337..993774 (+) 438 WP_404476547.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LG337_RS04620 (LG337_04615) - 993824..994264 (-) 441 WP_017722099.1 YwpF-like family protein -
  LG337_RS04625 (LG337_04620) ssb 994455..994874 (+) 420 WP_107555615.1 single-stranded DNA-binding protein Machinery gene
  LG337_RS04630 (LG337_04625) - 995300..996004 (+) 705 WP_107530638.1 transglycosylase family protein -
  LG337_RS04635 (LG337_04630) tenA 996432..997112 (+) 681 WP_318832723.1 thiaminase II -
  LG337_RS04640 (LG337_04635) thiD 997114..997935 (+) 822 WP_107530636.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LG337_RS04645 (LG337_04640) thiM 997928..998716 (+) 789 WP_318832725.1 hydroxyethylthiazole kinase -
  LG337_RS04650 (LG337_04645) thiE 998719..999357 (+) 639 WP_318832726.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16051.40 Da        Isoelectric Point: 6.4595

>NTDB_id=614647 LG337_RS04625 WP_107555615.1 994455..994874(+) (ssb) [Staphylococcus pseudoxylosus strain WLG-405]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYRDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHYVSELFIETIKFMSPRNKDEVSEFHETSPIDQVCNSIKDKSLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=614647 LG337_RS04625 WP_107555615.1 994455..994874(+) (ssb) [Staphylococcus pseudoxylosus strain WLG-405]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAGTTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAGAGATAAGGATCAAAATACCATTTGTGATTATTTATATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGAATTACTGGTCAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTATGTATCAGAACTTTTTATTGAAACGATTAAATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAGTGAATTTCATGAAACATCCCCTATAGATCAAGTTTGTAATTCAATTAAAGATAAAAGTCTACAAGACAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

64.486

76.978

0.496
  ssb Staphylococcus aureus MW2

63.551

76.978

0.489