Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG320_RS16440 Genome accession   NZ_CP085018
Coordinates   3172406..3172933 (-) Length   175 a.a.
NCBI ID   WP_012371897.1    Uniprot ID   A0A1S2W9M6
Organism   Exiguobacterium undae strain SLM-182     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3167406..3177933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG320_RS16420 (LG320_16410) dnaB 3168192..3169544 (-) 1353 WP_026831597.1 replicative DNA helicase -
  LG320_RS16425 (LG320_16415) rplI 3169564..3170007 (-) 444 WP_026831596.1 50S ribosomal protein L9 -
  LG320_RS16430 (LG320_16420) - 3170004..3171989 (-) 1986 WP_026831595.1 DHH family phosphoesterase -
  LG320_RS16435 (LG320_16425) rpsR 3172128..3172358 (-) 231 WP_012371896.1 30S ribosomal protein S18 -
  LG320_RS16440 (LG320_16430) ssb 3172406..3172933 (-) 528 WP_012371897.1 single-stranded DNA-binding protein Machinery gene
  LG320_RS16445 (LG320_16435) rpsF 3172957..3173244 (-) 288 WP_012371898.1 30S ribosomal protein S6 -
  LG320_RS16450 (LG320_16440) ychF 3173368..3174468 (-) 1101 WP_026831594.1 redox-regulated ATPase YchF -
  LG320_RS16455 (LG320_16445) - 3174724..3174912 (-) 189 WP_012371900.1 DUF951 domain-containing protein -
  LG320_RS16460 (LG320_16450) - 3174884..3175813 (-) 930 WP_404275370.1 mechanosensitive ion channel family protein -
  LG320_RS16465 (LG320_16455) yyaC 3175997..3176614 (+) 618 WP_035414299.1 spore protease YyaC -
  LG320_RS16470 (LG320_16460) - 3176692..3177459 (-) 768 WP_026831591.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18907.48 Da        Isoelectric Point: 4.9713

>NTDB_id=614585 LG320_RS16440 WP_012371897.1 3172406..3172933(-) (ssb) [Exiguobacterium undae strain SLM-182]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKDGQRRYRAEVVADSVRFLESRNASRSSDSDSYSSNSNTGGNGNAAGWGSQQQQNNSSSPAPASSSSNSGFGADPF
SGGSSIDLSDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=614585 LG320_RS16440 WP_012371897.1 3172406..3172933(-) (ssb) [Exiguobacterium undae strain SLM-182]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCTTGTGACCGTCCGTTTACAGGACAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAAAAAGGGAGCCTTGCAGGTGTTGAGGGTCGCCTTCAGATTAGT
AGCTATGACGATAAAGATGGTCAACGTCGTTATCGTGCAGAAGTCGTCGCGGATAGTGTTCGATTCCTAGAATCACGCAA
TGCAAGCCGTTCTTCCGATAGTGATAGCTACTCTTCGAATTCAAATACAGGTGGAAACGGGAATGCTGCAGGATGGGGTT
CACAGCAACAGCAGAACAACTCTTCCTCGCCAGCACCGGCTTCATCTTCATCGAACTCGGGCTTCGGCGCTGATCCGTTC
AGCGGCGGCAGTTCGATCGATCTTTCAGACGACGACCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2W9M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.809

100

0.537
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.648

100

0.537