Detailed information NTG0614559

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: NQD65_RS11220
• Genome accession: NZ_CP101996
• Coordinates: 2202079..2203188 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264870.1
• Uniprot ID: Q3JYE9
• Organism: Streptococcus agalactiae strain BCJB1835
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2197079..2208188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQD65_RS11195 (NQD65_11215)	-	2197451..2198290 (-)	840	WP_000181758.1	energy-coupling factor ABC transporter ATP-binding protein	-
NQD65_RS11200 (NQD65_11220)	pgsA	2198290..2198832 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
NQD65_RS11205 (NQD65_11225)	yfmH	2198955..2200238 (-)	1284	WP_000217762.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
NQD65_RS11210 (NQD65_11230)	yfmF	2200240..2201484 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
NQD65_RS11215 (NQD65_11235)	yaaA	2201723..2202076 (+)	354	WP_000384869.1	S4 domain-containing protein YaaA	-
NQD65_RS11220 (NQD65_11240)	recF	2202079..2203188 (+)	1110	WP_000264870.1	DNA replication/repair protein RecF	Machinery gene
NQD65_RS11225 (NQD65_11245)	-	2203200..2204066 (-)	867	WP_000398683.1	GRP family sugar transporter	-
NQD65_RS11230 (NQD65_11250)	-	2204122..2204784 (-)	663	WP_001873330.1	helix-turn-helix transcriptional regulator	-
NQD65_RS11235 (NQD65_11255)	guaB	2204859..2206340 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
NQD65_RS11240 (NQD65_11260)	-	2206497..2206982 (-)	486	WP_001034427.1	arginine repressor	-
NQD65_RS11245 (NQD65_11265)	-	2206992..2207672 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42471.27 Da
• Isoelectric Point: 7.3132

>NTDB_id=614559 NQD65_RS11220 WP_000264870.1 2202079..2203188(+) (recF) [Streptococcus agalactiae strain BCJB1835]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=614559 NQD65_RS11220 WP_000264870.1 2202079..2203188(+) (recF) [Streptococcus agalactiae strain BCJB1835]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAGCATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAATGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: Q3JYE9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.636	98.374	0.626
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447