Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LG311_RS06765 Genome accession   NZ_CP085008
Coordinates   1301774..1301962 (+) Length   62 a.a.
NCBI ID   WP_404350675.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain SLM-179     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296774..1306962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG311_RS06740 (LG311_06705) - 1298482..1298664 (-) 183 WP_010192034.1 YjzD family protein -
  LG311_RS06745 (LG311_06710) - 1298779..1298916 (+) 138 WP_223492772.1 hypothetical protein -
  LG311_RS06750 (LG311_06715) - 1299061..1299801 (+) 741 WP_404350669.1 hypothetical protein -
  LG311_RS06755 (LG311_06720) - 1299893..1300663 (+) 771 WP_404350671.1 hypothetical protein -
  LG311_RS06760 (LG311_06725) med 1300805..1301758 (+) 954 WP_404350673.1 BMP family ABC transporter substrate-binding protein Regulator
  LG311_RS06765 (LG311_06730) comZ 1301774..1301962 (+) 189 WP_404350675.1 ComZ family protein Regulator
  LG311_RS06770 (LG311_06735) - 1302023..1302265 (-) 243 WP_404350677.1 hypothetical protein -
  LG311_RS06775 (LG311_06740) - 1302617..1303549 (+) 933 WP_404350679.1 beta-ketoacyl-ACP synthase III -
  LG311_RS06780 (LG311_06745) fabF 1303598..1304836 (+) 1239 WP_404351954.1 beta-ketoacyl-ACP synthase II -
  LG311_RS06785 (LG311_06750) - 1304959..1305741 (+) 783 WP_223492780.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7216.37 Da        Isoelectric Point: 4.0857

>NTDB_id=614408 LG311_RS06765 WP_404350675.1 1301774..1301962(+) (comZ) [Sutcliffiella horikoshii strain SLM-179]
MEQDRTMQYMAIAMKYLPEAKQMLDETGLELEPQHIQPLVSLLTKVMDEAYELGKQNALEME

Nucleotide


Download         Length: 189 bp        

>NTDB_id=614408 LG311_RS06765 WP_404350675.1 1301774..1301962(+) (comZ) [Sutcliffiella horikoshii strain SLM-179]
ATGGAACAAGATAGAACGATGCAATATATGGCAATAGCTATGAAATATTTACCAGAAGCAAAACAAATGCTTGATGAAAC
AGGGCTGGAGTTGGAGCCTCAACATATTCAACCACTTGTCTCGTTGCTGACAAAAGTGATGGATGAAGCATATGAACTTG
GAAAGCAAAATGCGTTAGAAATGGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.724

93.548

0.484