Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LG311_RS06760 Genome accession   NZ_CP085008
Coordinates   1300805..1301758 (+) Length   317 a.a.
NCBI ID   WP_404350673.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain SLM-179     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295805..1306758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG311_RS06735 (LG311_06700) clpB 1295832..1298426 (+) 2595 WP_404350667.1 ATP-dependent chaperone ClpB -
  LG311_RS06740 (LG311_06705) - 1298482..1298664 (-) 183 WP_010192034.1 YjzD family protein -
  LG311_RS06745 (LG311_06710) - 1298779..1298916 (+) 138 WP_223492772.1 hypothetical protein -
  LG311_RS06750 (LG311_06715) - 1299061..1299801 (+) 741 WP_404350669.1 hypothetical protein -
  LG311_RS06755 (LG311_06720) - 1299893..1300663 (+) 771 WP_404350671.1 hypothetical protein -
  LG311_RS06760 (LG311_06725) med 1300805..1301758 (+) 954 WP_404350673.1 BMP family ABC transporter substrate-binding protein Regulator
  LG311_RS06765 (LG311_06730) comZ 1301774..1301962 (+) 189 WP_404350675.1 ComZ family protein Regulator
  LG311_RS06770 (LG311_06735) - 1302023..1302265 (-) 243 WP_404350677.1 hypothetical protein -
  LG311_RS06775 (LG311_06740) - 1302617..1303549 (+) 933 WP_404350679.1 beta-ketoacyl-ACP synthase III -
  LG311_RS06780 (LG311_06745) fabF 1303598..1304836 (+) 1239 WP_404351954.1 beta-ketoacyl-ACP synthase II -
  LG311_RS06785 (LG311_06750) - 1304959..1305741 (+) 783 WP_223492780.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35155.38 Da        Isoelectric Point: 4.0957

>NTDB_id=614407 LG311_RS06760 WP_404350673.1 1300805..1301758(+) (med) [Sutcliffiella horikoshii strain SLM-179]
MKKSLMVVILFILLLTACGQTTPESGDQKVGLLVPDTISDQVWGTKGYKGLLRIQTEYDLDVYYKEGIHTDTSIKEAVKE
FHKDGVTLVFGHGSEYAQTFNEISSDYPDIHFVCFNSQVQGDNVTSLNFEAHAMGFFGGMVAGHMTETNTIGILAAFEWQ
PEVDGFFEGALHENPDAKIIIRYTQDWNDPDKALEVLDDMIAQEVDVVYPAGDGYNVPVINSLKEQGLYAVGFVSDQSDL
GENTVLTSTIQHVPALYELVASRFFAGELESGNLSFDFKDDVISLGTFSPLVSKEYQENIIQQIEDYKSTGLLPNEK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=614407 LG311_RS06760 WP_404350673.1 1300805..1301758(+) (med) [Sutcliffiella horikoshii strain SLM-179]
ATGAAAAAATCATTAATGGTAGTCATACTATTTATTCTTTTATTAACTGCATGTGGACAAACTACTCCTGAAAGCGGAGA
TCAAAAGGTCGGCTTGTTGGTCCCTGATACGATAAGTGATCAGGTATGGGGAACAAAAGGCTATAAAGGGCTGTTGCGGA
TTCAAACGGAATATGACCTGGATGTATATTATAAAGAAGGCATACATACTGATACATCGATTAAAGAAGCGGTGAAAGAG
TTTCATAAAGACGGAGTTACCTTGGTATTTGGGCACGGCAGCGAATATGCGCAAACATTTAATGAGATATCATCTGATTA
TCCAGACATTCATTTTGTATGTTTTAATTCACAAGTTCAAGGTGATAATGTAACAAGCTTGAATTTTGAAGCACATGCCA
TGGGCTTTTTCGGTGGGATGGTAGCTGGTCATATGACGGAGACTAATACTATCGGAATTTTAGCCGCATTTGAATGGCAG
CCTGAAGTGGACGGATTCTTTGAAGGGGCATTACATGAAAATCCTGATGCTAAAATTATAATAAGGTACACGCAAGACTG
GAATGATCCTGATAAGGCATTGGAAGTGCTTGATGATATGATCGCTCAAGAGGTGGATGTTGTGTATCCTGCTGGTGATG
GATATAATGTTCCTGTCATCAATAGCTTAAAGGAACAGGGTCTATATGCGGTAGGATTCGTCTCTGATCAGTCAGACTTA
GGGGAGAATACTGTACTTACCAGCACCATTCAGCATGTCCCTGCCTTGTATGAACTGGTGGCTAGTCGTTTCTTTGCAGG
GGAATTAGAATCTGGTAACCTTTCCTTTGATTTTAAAGATGATGTCATTTCACTTGGAACATTCAGTCCGCTAGTAAGCA
AGGAATACCAGGAAAACATTATTCAACAAATTGAGGATTATAAGTCCACCGGATTATTACCAAACGAAAAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.822

99.054

0.533