Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LG310_RS04510 Genome accession   NZ_CP084997
Coordinates   951132..951551 (+) Length   139 a.a.
NCBI ID   WP_021339937.1    Uniprot ID   -
Organism   Staphylococcus equorum strain SLM-340     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 946132..956551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG310_RS04480 (LG310_04455) atpD 946169..947581 (+) 1413 WP_021339775.1 F0F1 ATP synthase subunit beta -
  LG310_RS04485 (LG310_04460) - 947601..948005 (+) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  LG310_RS04490 (LG310_04465) - 948329..948562 (+) 234 WP_002507083.1 DUF1146 family protein -
  LG310_RS04495 (LG310_04470) murA 948669..949934 (+) 1266 WP_021339774.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LG310_RS04500 (LG310_04475) fabZ 949992..950432 (+) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LG310_RS04505 (LG310_04480) - 950501..950941 (-) 441 WP_002507086.1 YwpF-like family protein -
  LG310_RS04510 (LG310_04485) ssb 951132..951551 (+) 420 WP_021339937.1 single-stranded DNA-binding protein Machinery gene
  LG310_RS04515 (LG310_04490) - 952035..952715 (+) 681 WP_002507088.1 transglycosylase family protein -
  LG310_RS04520 (LG310_04495) tenA 953105..953794 (+) 690 WP_021339938.1 thiaminase II -
  LG310_RS04525 (LG310_04500) thiD 953787..954608 (+) 822 WP_021339939.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LG310_RS04530 (LG310_04505) thiM 954601..955392 (+) 792 WP_031266140.1 hydroxyethylthiazole kinase -
  LG310_RS04535 (LG310_04510) thiE 955392..956030 (+) 639 WP_021339941.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16259.49 Da        Isoelectric Point: 4.8624

>NTDB_id=614303 LG310_RS04510 WP_021339937.1 951132..951551(+) (ssb) [Staphylococcus equorum strain SLM-340]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=614303 LG310_RS04510 WP_021339937.1 951132..951551(+) (ssb) [Staphylococcus equorum strain SLM-340]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597