Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NQD67_RS02140 Genome accession   NZ_CP101994
Coordinates   381313..382347 (+) Length   344 a.a.
NCBI ID   WP_000732715.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB3343     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 376313..387347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD67_RS02100 (NQD67_02100) tsaE 376388..376831 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NQD67_RS02105 (NQD67_02105) - 376824..377345 (+) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  NQD67_RS02110 (NQD67_02110) - 377354..378661 (+) 1308 WP_000708161.1 LCP family protein -
  NQD67_RS02115 (NQD67_02115) - 378725..379021 (-) 297 WP_000690175.1 hypothetical protein -
  NQD67_RS02120 (NQD67_02120) - 379018..379437 (-) 420 WP_000368099.1 HIT family protein -
  NQD67_RS02125 (NQD67_02125) - 379773..380276 (+) 504 WP_000773458.1 hypothetical protein -
  NQD67_RS02130 (NQD67_02130) - 380328..380514 (-) 187 Protein_347 hypothetical protein -
  NQD67_RS02135 (NQD67_02135) pptA 380586..381311 (+) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  NQD67_RS02140 (NQD67_02140) pptB 381313..382347 (+) 1035 WP_000732715.1 ABC transporter permease Regulator
  NQD67_RS02145 (NQD67_02145) ccrZ 382405..383205 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  NQD67_RS02150 (NQD67_02150) trmB 383195..383830 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQD67_RS02160 (NQD67_02160) rimP 384319..384795 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  NQD67_RS02165 (NQD67_02165) nusA 384831..385982 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  NQD67_RS02170 (NQD67_02170) rnpM 386004..386300 (+) 297 WP_001140526.1 RNase P modulator RnpM -
  NQD67_RS02175 (NQD67_02175) - 386293..386595 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40275.64 Da        Isoelectric Point: 10.4229

>NTDB_id=614273 NQD67_RS02140 WP_000732715.1 381313..382347(+) (pptB) [Streptococcus agalactiae strain BCJB3343]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDVILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELEPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=614273 NQD67_RS02140 WP_000732715.1 381313..382347(+) (pptB) [Streptococcus agalactiae strain BCJB3343]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAATTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGTTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGGAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.965

100

0.48
  pptB Streptococcus salivarius strain HSISS4

47.674

100

0.477