Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LG291_RS19790 Genome accession   NZ_CP084990
Coordinates   3885088..3885840 (-) Length   250 a.a.
NCBI ID   WP_404355659.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3880088..3890840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS19765 (LG291_19600) - 3880869..3881951 (-) 1083 WP_404355650.1 hypothetical protein -
  LG291_RS19770 (LG291_19605) - 3882080..3882526 (-) 447 WP_404355652.1 type II secretion system protein -
  LG291_RS19775 (LG291_19610) - 3882553..3883344 (-) 792 WP_404355654.1 pilus assembly protein PilO -
  LG291_RS19780 (LG291_19615) - 3883341..3884000 (-) 660 WP_404355656.1 fimbrial assembly protein -
  LG291_RS19785 (LG291_19620) pilM 3884004..3884999 (-) 996 WP_404355657.1 type IV pilus biogenesis protein PilM -
  LG291_RS19790 (LG291_19625) comC 3885088..3885840 (-) 753 WP_404355659.1 prepilin peptidase Machinery gene
  LG291_RS19795 (LG291_19630) - 3885851..3886270 (-) 420 WP_404355661.1 type II secretion system protein -
  LG291_RS19800 (LG291_19635) - 3886376..3887581 (-) 1206 WP_404355663.1 type II secretion system F family protein -
  LG291_RS19805 (LG291_19640) pilT 3887568..3888623 (-) 1056 WP_404355665.1 type IV pilus twitching motility protein PilT Machinery gene
  LG291_RS19810 (LG291_19645) - 3888633..3890294 (-) 1662 WP_394580162.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27106.75 Da        Isoelectric Point: 9.0514

>NTDB_id=614226 LG291_RS19790 WP_404355659.1 3885088..3885840(-) (comC) [Cytobacillus firmus strain WLG-456]
MYQLTIPLFLFGTILGSFYNVAGLRIPQNQSIAAPRSHCPHCKHTLSPLELVPVLSYILLGGKCRRCKAPVSALYPAVEL
STGILFAAAPLIMGWTAELFVAWTLISLVIIVFVSDFKYMIIPDKVLLFFAAVLLAERIFIPLSPWWDSLAGAGLGFFLL
LLIAVISKGGMGGGDIKLYAVIGIVLGVKLVLLSFFLATLFGAAIGGLGMIFGIVQKGKPIPFGPFIGIGTLLAYFYGSE
LIEWYFHSFL

Nucleotide


Download         Length: 753 bp        

>NTDB_id=614226 LG291_RS19790 WP_404355659.1 3885088..3885840(-) (comC) [Cytobacillus firmus strain WLG-456]
ATGTACCAATTGACAATTCCATTATTTTTGTTTGGAACCATCCTAGGCTCTTTCTACAACGTAGCAGGCCTAAGAATCCC
GCAGAACCAGTCAATCGCAGCACCGCGGTCCCATTGCCCGCACTGTAAGCATACTCTATCACCTTTGGAACTTGTTCCAG
TATTATCGTATATACTTCTGGGCGGAAAGTGCCGGCGCTGCAAGGCGCCGGTTTCAGCCTTATATCCGGCTGTTGAGCTT
TCGACAGGAATTTTATTTGCCGCAGCCCCGCTCATAATGGGCTGGACTGCTGAATTGTTTGTTGCCTGGACTCTGATTTC
CCTTGTAATTATTGTGTTTGTATCGGACTTCAAATATATGATTATTCCAGATAAGGTTTTACTGTTTTTTGCAGCTGTCT
TATTAGCAGAACGCATTTTCATACCGCTCTCTCCATGGTGGGACAGCTTAGCAGGTGCAGGACTCGGTTTTTTCCTTCTG
CTGCTGATAGCTGTAATCAGCAAAGGCGGAATGGGCGGAGGAGATATCAAGCTGTATGCCGTCATTGGCATTGTTTTGGG
TGTTAAGCTCGTTTTACTTTCATTTTTTCTGGCAACTTTGTTCGGTGCCGCCATTGGCGGCCTTGGCATGATTTTCGGAA
TTGTCCAAAAAGGCAAGCCCATCCCCTTTGGCCCATTCATAGGAATTGGAACTTTACTGGCTTATTTTTATGGCAGTGAA
TTGATTGAATGGTATTTTCATTCATTTCTATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-89)

Type IV leader peptidase family (Peptidase_A24)

(104-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.84

95.2

0.484