Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LG653_RS04390 Genome accession   NZ_CP084921
Coordinates   895661..896521 (-) Length   286 a.a.
NCBI ID   WP_002114758.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CEP14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 890661..901521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS04365 (LG653_04365) - 891551..892861 (+) 1311 WP_002114682.1 hypothetical protein -
  LG653_RS04370 (LG653_04370) - 892938..893264 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  LG653_RS04375 (LG653_04375) rlmB 893367..894116 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LG653_RS04380 (LG653_04380) - 894152..895066 (+) 915 WP_005804143.1 DMT family transporter -
  LG653_RS04385 (LG653_04385) coaE 895063..895659 (-) 597 WP_002115011.1 dephospho-CoA kinase -
  LG653_RS04390 (LG653_04390) pilD 895661..896521 (-) 861 WP_002114758.1 A24 family peptidase Machinery gene
  LG653_RS04395 (LG653_04395) pilC 896521..897747 (-) 1227 WP_002114869.1 type II secretion system F family protein Machinery gene
  LG653_RS04400 (LG653_04400) pilB 897774..899486 (-) 1713 WP_005804145.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LG653_RS04405 (LG653_04405) tpiA 899778..900572 (+) 795 WP_002114826.1 triose-phosphate isomerase -
  LG653_RS04410 (LG653_04410) secG 900585..900914 (+) 330 WP_002115012.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32168.70 Da        Isoelectric Point: 7.1044

>NTDB_id=614084 LG653_RS04390 WP_002114758.1 895661..896521(-) (pilD) [Acinetobacter pittii strain CEP14]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=614084 LG653_RS04390 WP_002114758.1 895661..896521(-) (pilD) [Acinetobacter pittii strain CEP14]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

96.503

100

0.965
  pilD Acinetobacter nosocomialis M2

96.154

100

0.962
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

53.309

95.105

0.507
  pilD Neisseria gonorrhoeae MS11

47.71

91.608

0.437