Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LB315_RS10905 Genome accession   NZ_CP084892
Coordinates   2181808..2182203 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2176808..2187203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS10880 (LB315_10890) thiE 2177416..2178057 (-) 642 WP_229373852.1 thiamine phosphate synthase -
  LB315_RS10885 (LB315_10895) thiM 2178062..2178850 (-) 789 WP_001108485.1 hydroxyethylthiazole kinase -
  LB315_RS10890 (LB315_10900) thiD 2178834..2179664 (-) 831 WP_229373853.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LB315_RS10895 (LB315_10905) tenA 2179657..2180346 (-) 690 WP_000396067.1 thiaminase II -
  LB315_RS10900 (LB315_10910) sceD 2180733..2181419 (-) 687 WP_117197319.1 lytic transglycosylase SceD -
  LB315_RS10905 (LB315_10915) ssb 2181808..2182203 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LB315_RS10910 (LB315_10920) - 2182397..2182837 (+) 441 WP_229373854.1 YwpF-like family protein -
  LB315_RS10915 (LB315_10925) fabZ 2182894..2183334 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LB315_RS10920 (LB315_10930) murA 2183368..2184633 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LB315_RS10925 (LB315_10935) - 2184744..2184977 (-) 234 WP_000384523.1 DUF1146 family protein -
  LB315_RS10930 (LB315_10940) - 2185109..2185186 (-) 78 Protein_2114 hypothetical protein -
  LB315_RS10935 (LB315_10945) - 2185599..2186003 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=613836 LB315_RS10905 WP_000932694.1 2181808..2182203(-) (ssb) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=613836 LB315_RS10905 WP_000932694.1 2181808..2182203(-) (ssb) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992