Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NPS16_RS02825 Genome accession   NZ_CP101986
Coordinates   579304..579903 (+) Length   199 a.a.
NCBI ID   WP_002264648.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574304..584903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS16_RS02800 (NPS16_02800) - 574368..574844 (+) 477 WP_258969073.1 Fur family transcriptional regulator -
  NPS16_RS02805 (NPS16_02805) - 574907..575062 (+) 156 WP_002263254.1 hypothetical protein -
  NPS16_RS02810 (NPS16_02810) - 575125..576060 (-) 936 WP_002280670.1 dihydroorotate oxidase -
  NPS16_RS02815 (NPS16_02815) - 576278..576970 (+) 693 WP_002263252.1 phosphoglycerate mutase -
  NPS16_RS02820 (NPS16_02820) pbp2b 577216..579294 (+) 2079 WP_002269004.1 penicillin-binding protein PBP2B -
  NPS16_RS02825 (NPS16_02825) recR 579304..579903 (+) 600 WP_002264648.1 recombination mediator RecR Machinery gene
  NPS16_RS02830 (NPS16_02830) - 580115..581164 (+) 1050 WP_002265801.1 D-alanine--D-alanine ligase -
  NPS16_RS02835 (NPS16_02835) - 581336..581896 (-) 561 WP_002265800.1 folate family ECF transporter S component -
  NPS16_RS02840 (NPS16_02840) - 582249..583199 (+) 951 WP_002263247.1 bile acid:sodium symporter family protein -
  NPS16_RS02845 (NPS16_02845) murF 583277..584635 (+) 1359 WP_258969074.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21878.99 Da        Isoelectric Point: 4.6800

>NTDB_id=613833 NPS16_RS02825 WP_002264648.1 579304..579903(+) (recR) [Streptococcus mutans strain COCC33-14]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNNFAKNLLAAKRELTYCFVCGNLTDDDPCNICTDESRDRS
TVLVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDIHEVIIATNATADGEATAMYISRV
LKPAGITVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=613833 NPS16_RS02825 WP_002264648.1 579304..579903(+) (recR) [Streptococcus mutans strain COCC33-14]
ATGCTCTACCCAACGCCTATTGCCAAACTTATTGAGAGCTTCACAAAATTACCGGGTATTGGTATCAAAACAGCGACTCG
CTTAGCTTTTTATACGATTGGTATGAGTGATGAAGACGTTAATAACTTTGCTAAAAATCTTCTAGCTGCTAAACGAGAAT
TGACCTACTGTTTTGTTTGTGGCAATCTGACAGATGATGATCCTTGCAATATTTGTACAGATGAAAGCAGAGACCGCTCA
ACTGTTTTAGTAGTTGAAGATAGTAAGGATGTTTCTGCAATGGAAAAAATTCAGGAATATCATGGTCTTTATCATGTTTT
ACACGGCCTGATTTCTCCTATGAATGGTATTGGTCCTGATGATATTAATTTGAAAAGTCTTCTGACACGCTTACGTGATA
ATAGTGATATTCATGAAGTCATTATCGCAACTAATGCCACAGCAGATGGAGAAGCAACGGCTATGTATATTTCCAGAGTT
CTCAAACCTGCTGGTATTACAGTTACACGTTTAGCGCGTGGGCTTGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGT
AACTCTGCTTCGAGCAATTGAAAACAGGACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-172)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

83.417

100

0.834
  recR Bacillus subtilis subsp. subtilis str. 168

63.317

100

0.633
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.98

98.492

0.482