Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LB315_RS08495 Genome accession   NZ_CP084892
Coordinates   1721835..1722521 (-) Length   228 a.a.
NCBI ID   WP_229373761.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1716835..1727521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS08475 (LB315_08485) rpsT 1717749..1718000 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LB315_RS08480 (LB315_08490) holA 1718045..1719019 (-) 975 WP_115289544.1 DNA polymerase III subunit delta -
  LB315_RS08485 (LB315_08495) comEC 1719076..1721277 (-) 2202 WP_229373760.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LB315_RS08490 (LB315_08500) - 1721282..1721743 (-) 462 WP_000439693.1 ComE operon protein 2 -
  LB315_RS08495 (LB315_08505) comEA 1721835..1722521 (-) 687 WP_229373761.1 ComEA family DNA-binding protein Machinery gene
  LB315_RS08500 (LB315_08510) - 1722561..1723277 (-) 717 WP_229373762.1 class I SAM-dependent methyltransferase -
  LB315_RS08505 (LB315_08515) rsfS 1723280..1723633 (-) 354 WP_001088020.1 ribosome silencing factor -
  LB315_RS08510 (LB315_08520) yqeK 1723634..1724218 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LB315_RS08515 (LB315_08525) nadD 1724208..1724777 (-) 570 WP_000725161.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LB315_RS08520 (LB315_08530) yhbY 1724780..1725070 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  LB315_RS08525 (LB315_08535) aroE 1725074..1725880 (-) 807 WP_229373763.1 shikimate dehydrogenase -
  LB315_RS08530 (LB315_08540) yqeH 1725894..1726994 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25733.39 Da        Isoelectric Point: 9.6753

>NTDB_id=613825 LB315_RS08495 WP_229373761.1 1721835..1722521(-) (comEA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MVLLYQFLLRYKDFSTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=613825 LB315_RS08495 WP_229373761.1 1721835..1722521(-) (comEA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTCAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969
  comEA Staphylococcus aureus N315

97.357

99.561

0.969