Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   LB315_RS04880 Genome accession   NZ_CP084892
Coordinates   1005960..1006529 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000960..1011529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS04860 (LB315_04865) - 1002463..1003821 (+) 1359 WP_000021872.1 TrkH family potassium uptake protein -
  LB315_RS04865 (LB315_04870) - 1003960..1005471 (+) 1512 WP_229374553.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  LB315_RS04880 (LB315_04885) comK/comK1 1005960..1006529 (-) 570 WP_000287265.1 competence protein ComK Regulator
  LB315_RS04885 (LB315_04890) - 1006739..1006957 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  LB315_RS04890 (LB315_04895) - 1007038..1008024 (-) 987 WP_000668817.1 lipoate--protein ligase -
  LB315_RS04895 (LB315_04900) - 1008223..1008399 (+) 177 WP_000214898.1 YkvS family protein -
  LB315_RS04900 (LB315_04905) - 1008414..1009016 (+) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  LB315_RS04905 - 1009334..1009396 (+) 63 WP_228764722.1 hypothetical protein -
  LB315_RS04910 (LB315_04915) - 1009935..1010033 (+) 99 Protein_957 hypothetical protein -
  LB315_RS04915 (LB315_04920) - 1010046..1010318 (+) 273 WP_029656317.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=613811 LB315_RS04880 WP_000287265.1 1005960..1006529(-) (comK/comK1) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=613811 LB315_RS04880 WP_000287265.1 1005960..1006529(-) (comK/comK1) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACTCATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1