Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LB315_RS04745 Genome accession   NZ_CP084892
Coordinates   975463..976449 (+) Length   328 a.a.
NCBI ID   WP_229374544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 970463..981449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS04720 (LB315_04725) opp4B 970676..971638 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  LB315_RS04725 (LB315_04730) opp4C 971650..972531 (+) 882 WP_001180271.1 oligopeptide ABC transporter permease -
  LB315_RS04730 (LB315_04735) trpS 972573..973562 (-) 990 WP_000448929.1 tryptophan--tRNA ligase -
  LB315_RS04735 (LB315_04740) spxA 973857..974252 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  LB315_RS04740 (LB315_04745) mecA 974623..975342 (+) 720 WP_001217728.1 adaptor protein MecA -
  LB315_RS04745 (LB315_04750) coiA 975463..976449 (+) 987 WP_229374544.1 competence protein CoiA family protein Machinery gene
  LB315_RS04750 (LB315_04755) pepF 976497..978305 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  LB315_RS04755 (LB315_04760) yjbH 978768..979574 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  LB315_RS04760 (LB315_04765) - 979597..979962 (-) 366 WP_229374546.1 truncated hemoglobin -
  LB315_RS04765 (LB315_04770) - 980066..980659 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  LB315_RS04770 (LB315_04775) - 980845..981192 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38815.36 Da        Isoelectric Point: 9.6574

>NTDB_id=613810 LB315_RS04745 WP_229374544.1 975463..976449(+) (coiA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MLVALNEERERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=613810 LB315_RS04745 WP_229374544.1 975463..976449(+) (coiA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGTTAGTAGCTTTAAATGAAGAAAGGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(7-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.951

100

0.97
  coiA Staphylococcus aureus MW2

96.951

100

0.97