Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LB315_RS02775 Genome accession   NZ_CP084892
Coordinates   573765..574334 (+) Length   189 a.a.
NCBI ID   WP_229374363.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 568765..579334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS02750 (LB315_02755) cysE 569978..570625 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  LB315_RS02755 (LB315_02760) cysS 570609..572009 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  LB315_RS02760 (LB315_02765) - 572002..572406 (+) 405 WP_103204465.1 Mini-ribonuclease 3 -
  LB315_RS02765 (LB315_02770) rlmB 572414..573160 (+) 747 WP_000390331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LB315_RS02770 (LB315_02775) - 573160..573684 (+) 525 WP_000664738.1 NYN domain-containing protein -
  LB315_RS02775 (LB315_02780) sigH 573765..574334 (+) 570 WP_229374363.1 RNA polymerase sigma factor Regulator
  LB315_RS02780 (LB315_02785) rpmG 574449..574592 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LB315_RS02785 (LB315_02790) secE 574648..574830 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LB315_RS02790 (LB315_02795) nusG 574843..575391 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LB315_RS02795 (LB315_02800) rplK 575572..575994 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LB315_RS02800 (LB315_02805) rplA 576202..576894 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LB315_RS02805 (LB315_02810) rplJ 577166..577666 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  LB315_RS02810 (LB315_02815) rplL 577710..578078 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LB315_RS02815 (LB315_02820) - 578253..578861 (+) 609 WP_229374364.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23063.94 Da        Isoelectric Point: 9.6015

>NTDB_id=613805 LB315_RS02775 WP_229374363.1 573765..574334(+) (sigH) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYLKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=613805 LB315_RS02775 WP_229374363.1 573765..574334(+) (sigH) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTGAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979