Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NPS17_RS02240 Genome accession   NZ_CP101985
Coordinates   461979..462572 (-) Length   197 a.a.
NCBI ID   WP_002263052.1    Uniprot ID   Q8DVL3
Organism   Streptococcus mutans strain COCC33-14R     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 456979..467572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS02225 (NPS17_02225) nadE 457376..458200 (+) 825 WP_002271804.1 ammonia-dependent NAD(+) synthetase -
  NPS17_RS02230 (NPS17_02230) pepC 458313..459647 (+) 1335 WP_258969062.1 aminopeptidase C -
  NPS17_RS02235 (NPS17_02235) pbp1a 459983..461878 (-) 1896 Protein_404 penicillin-binding protein PBP1A -
  NPS17_RS02240 (NPS17_02240) recU 461979..462572 (-) 594 WP_002263052.1 Holliday junction resolvase RecU Machinery gene
  NPS17_RS02245 (NPS17_02245) - 462652..463173 (+) 522 WP_002263051.1 DUF1273 domain-containing protein -
  NPS17_RS02250 (NPS17_02250) gpsB 463279..463617 (+) 339 WP_002263050.1 cell division regulator GpsB -
  NPS17_RS02260 (NPS17_02260) - 464067..465221 (+) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  NPS17_RS02265 (NPS17_02265) - 465237..466877 (+) 1641 WP_002271864.1 cell division site-positioning protein MapZ family protein -
  NPS17_RS02270 (NPS17_02270) luxS 467038..467520 (-) 483 WP_002264383.1 S-ribosylhomocysteine lyase Regulator

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.28 Da        Isoelectric Point: 10.1831

>NTDB_id=613703 NPS17_RS02240 WP_002263052.1 461979..462572(-) (recU) [Streptococcus mutans strain COCC33-14R]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSQKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=613703 NPS17_RS02240 WP_002263052.1 461979..462572(-) (recU) [Streptococcus mutans strain COCC33-14R]
ATGGTCAACTATCCTCATCATTTCATTCGTAAACAAAGCAAACCCAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
TGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCACAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAGGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATCTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503