Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   NPS17_RS02270 Genome accession   NZ_CP101985
Coordinates   467038..467520 (-) Length   160 a.a.
NCBI ID   WP_002264383.1    Uniprot ID   -
Organism   Streptococcus mutans strain COCC33-14R     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 462038..472520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS17_RS02245 (NPS17_02245) - 462652..463173 (+) 522 WP_002263051.1 DUF1273 domain-containing protein -
  NPS17_RS02250 (NPS17_02250) gpsB 463279..463617 (+) 339 WP_002263050.1 cell division regulator GpsB -
  NPS17_RS02260 (NPS17_02260) - 464067..465221 (+) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  NPS17_RS02265 (NPS17_02265) - 465237..466877 (+) 1641 WP_002271864.1 cell division site-positioning protein MapZ family protein -
  NPS17_RS02270 (NPS17_02270) luxS 467038..467520 (-) 483 WP_002264383.1 S-ribosylhomocysteine lyase Regulator
  NPS17_RS02275 (NPS17_02275) - 467665..469272 (+) 1608 WP_002263046.1 ribonuclease Y -
  NPS17_RS02280 (NPS17_02280) gmk 469722..470354 (+) 633 WP_002263045.1 guanylate kinase -
  NPS17_RS02285 (NPS17_02285) rpoZ 470378..470695 (+) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17976.62 Da        Isoelectric Point: 6.1364

>NTDB_id=613704 NPS17_RS02270 WP_002264383.1 467038..467520(-) (luxS) [Streptococcus mutans strain COCC33-14R]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=613704 NPS17_RS02270 WP_002264383.1 467038..467520(-) (luxS) [Streptococcus mutans strain COCC33-14R]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAACTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369