Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   N175_RS10130 Genome accession   NC_022223
Coordinates   2212659..2214065 (-) Length   468 a.a.
NCBI ID   WP_026028983.1    Uniprot ID   -
Organism   Vibrio anguillarum M3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2207659..2219065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N175_RS10095 (N175_10385) moaE 2208327..2208797 (-) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -
  N175_RS10100 (N175_10390) moaD 2208800..2209045 (-) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  N175_RS10105 (N175_10395) moaC 2209038..2209538 (-) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  N175_RS10110 (N175_10400) moaB 2209549..2210061 (-) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  N175_RS10115 (N175_10405) moaA 2210128..2211117 (-) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  N175_RS10120 (N175_10410) - 2211429..2212319 (+) 891 WP_013857260.1 YvcK family protein -
  N175_RS10125 (N175_10415) luxU 2212316..2212654 (-) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  N175_RS10130 (N175_10420) luxO 2212659..2214065 (-) 1407 WP_026028983.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  N175_RS10135 (N175_10425) uvrB 2214307..2216337 (-) 2031 WP_041769234.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52158.56 Da        Isoelectric Point: 6.0312

>NTDB_id=61370 N175_RS10130 WP_026028983.1 2212659..2214065(-) (luxO) [Vibrio anguillarum M3]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=61370 N175_RS10130 WP_026028983.1 2212659..2214065(-) (luxO) [Vibrio anguillarum M3]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATTGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCTAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGAAACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
GCAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CGATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment