Detailed information NTG0061364

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: N175_RS06865
• Genome accession: NC_022223
• Coordinates: 1461695..1463119 (-)
• Length: 474 a.a.
• NCBI ID: WP_013856630.1
• Uniprot ID: -
• Organism: Vibrio anguillarum M3
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1456695..1468119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N175_RS06850 (N175_07065)	cdd	1459462..1460349 (-)	888	WP_013856628.1	cytidine deaminase	-
N175_RS06855 (N175_07070)	-	1460558..1461238 (-)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
N175_RS06860 (N175_07075)	-	1461238..1461570 (-)	333	WP_033197434.1	CidA/LrgA family protein	-
N175_RS06865 (N175_07080)	sbcB	1461695..1463119 (-)	1425	WP_013856630.1	exodeoxyribonuclease I	Machinery gene
N175_RS06870 (N175_07085)	-	1463271..1464638 (-)	1368	WP_026028454.1	L-cystine transporter	-
N175_RS06875 (N175_07090)	-	1464859..1465542 (-)	684	WP_013856632.1	NAD(P)H-binding protein	-
N175_RS06880 (N175_07095)	-	1465759..1467717 (+)	1959	WP_013856634.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54593.05 Da
• Isoelectric Point: 5.4372

>NTDB_id=61364 N175_RS06865 WP_013856630.1 1461695..1463119(-) (sbcB) [Vibrio anguillarum M3]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCAILAPAKTLTAENAD
HIGVDRNLCLEHLALLKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=61364 N175_RS06865 WP_013856630.1 1461695..1463119(-) (sbcB) [Vibrio anguillarum M3]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGTGAACCACTGGTTATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTAGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTATACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCACTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCGCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCCTCAAGCAGTACCCAGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGATCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTAACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.973	99.789	0.808