Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NPS18_RS02890 Genome accession   NZ_CP101984
Coordinates   556798..557397 (+) Length   199 a.a.
NCBI ID   WP_002263250.1    Uniprot ID   Q8DV99
Organism   Streptococcus mutans strain UA-159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551798..562397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS18_RS02865 (NPS18_02865) - 551862..552337 (+) 476 Protein_529 Fur family transcriptional regulator -
  NPS18_RS02870 (NPS18_02870) - 552400..552555 (+) 156 WP_002263254.1 hypothetical protein -
  NPS18_RS02875 (NPS18_02875) - 552618..553553 (-) 936 WP_002263253.1 dihydroorotate oxidase -
  NPS18_RS02880 (NPS18_02880) - 553771..554463 (+) 693 WP_002263252.1 phosphoglycerate mutase -
  NPS18_RS02885 (NPS18_02885) pbp2b 554710..556788 (+) 2079 WP_002263251.1 penicillin-binding protein PBP2B -
  NPS18_RS02890 (NPS18_02890) recR 556798..557397 (+) 600 WP_002263250.1 recombination mediator RecR Machinery gene
  NPS18_RS02895 (NPS18_02895) - 557609..558658 (+) 1050 WP_002352219.1 D-alanine--D-alanine ligase -
  NPS18_RS02900 (NPS18_02900) - 558830..559390 (-) 561 WP_002263248.1 folate family ECF transporter S component -
  NPS18_RS02905 (NPS18_02905) - 559743..560693 (+) 951 WP_002263247.1 bile acid:sodium symporter family protein -
  NPS18_RS02910 (NPS18_02910) murF 560771..562129 (+) 1359 WP_002263246.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21818.89 Da        Isoelectric Point: 4.6800

>NTDB_id=613597 NPS18_RS02890 WP_002263250.1 556798..557397(+) (recR) [Streptococcus mutans strain UA-159]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNNFAKNLLAAKRELTYCSVCGNLTDDDPCNICTDESRDRS
TVLVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDIHEVIIATNATADGEATAMYISRV
LKPAGITVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=613597 NPS18_RS02890 WP_002263250.1 556798..557397(+) (recR) [Streptococcus mutans strain UA-159]
ATGCTCTACCCAACGCCTATTGCCAAACTTATTGAGAGCTTCACAAAATTACCGGGTATTGGTATCAAAACAGCGACTCG
CTTAGCTTTTTATACGATTGGTATGAGTGATGAAGACGTTAATAACTTTGCTAAAAATCTTCTAGCTGCTAAACGAGAAT
TGACCTACTGTTCTGTTTGTGGCAATCTGACAGATGATGATCCTTGCAATATTTGTACAGATGAAAGCAGAGACCGCTCG
ACTGTTTTAGTAGTTGAAGATAGTAAGGATGTTTCTGCAATGGAAAAAATTCAGGAATATCATGGTCTTTATCATGTTTT
ACACGGCCTGATTTCTCCTATGAATGGTATTGGTCCTGATGATATTAATTTGAAAAGTCTTCTGACACGCCTACGTGATA
ATAGTGATATTCATGAAGTCATTATCGCAACTAATGCCACAGCAGATGGAGAAGCAACGGCTATGTATATTTCCAGAGTT
CTCAAACCTGCTGGTATTACAGTTACACGTTTAGCGCGTGGGCTTGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGT
AACTCTGCTTCGAGCAATTGAAAACAGGACAGAGTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

83.92

100

0.839
  recR Bacillus subtilis subsp. subtilis str. 168

63.819

100

0.638
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.98

98.492

0.482