Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM08_RS10265 Genome accession   NZ_CP084868
Coordinates   2195309..2195905 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain SA1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2190309..2200905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM08_RS10245 (LGM08_10245) - 2190500..2192257 (-) 1758 WP_004147851.1 AAA family ATPase -
  LGM08_RS10250 (LGM08_10250) matP 2192443..2192895 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM08_RS10255 (LGM08_10255) ompA 2193028..2194098 (-) 1071 WP_002898408.1 porin OmpA -
  LGM08_RS10260 (LGM08_10260) sulA 2194451..2194960 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LGM08_RS10265 (LGM08_10265) sxy/tfoX 2195309..2195905 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM08_RS10270 (LGM08_10270) yccS 2195919..2198054 (-) 2136 WP_004213263.1 YccS family putative transporter -
  LGM08_RS10275 (LGM08_10275) - 2198072..2198518 (-) 447 WP_002898425.1 YccF domain-containing protein -
  LGM08_RS10280 (LGM08_10280) helD 2198643..2200697 (+) 2055 WP_004213261.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=613588 LGM08_RS10265 WP_004150836.1 2195309..2195905(+) (sxy/tfoX) [Klebsiella pneumoniae strain SA1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613588 LGM08_RS10265 WP_004150836.1 2195309..2195905(+) (sxy/tfoX) [Klebsiella pneumoniae strain SA1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAAGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51