Detailed information    

insolico Bioinformatically predicted

Overview


Name   recP/tkt   Type   Machinery gene
Locus tag   NP434_RS09650 Genome accession   NZ_CP101936
Coordinates   1920450..1922453 (+) Length   667 a.a.
NCBI ID   WP_014476936.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BGSC 10A5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1915450..1927453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP434_RS09610 (NP434_09610) pghL 1915815..1916573 (+) 759 WP_033885141.1 gamma-polyglutamate hydrolase PghL -
  NP434_RS09615 (NP434_09615) - 1916600..1917049 (-) 450 WP_003245454.1 YndM family protein -
  NP434_RS09620 (NP434_09620) fosM 1917258..1917691 (+) 434 Protein_1844 FosM family fosfomycin resistance protein -
  NP434_RS09625 (NP434_09625) - 1917600..1917857 (+) 258 WP_371929877.1 hypothetical protein -
  NP434_RS09630 (NP434_09630) dinR/lexA 1918228..1918845 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  NP434_RS09635 (NP434_09635) yneA 1918995..1919312 (+) 318 WP_015252003.1 cell division suppressor protein YneA -
  NP434_RS09640 (NP434_09640) dinL 1919331..1919984 (+) 654 WP_015714011.1 recombinase family protein -
  NP434_RS09645 (NP434_09645) ynzC 1920048..1920281 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  NP434_RS09650 (NP434_09650) recP/tkt 1920450..1922453 (+) 2004 WP_014476936.1 transketolase Machinery gene
  NP434_RS09655 (NP434_09655) sirA 1922606..1923052 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  NP434_RS09660 (NP434_09660) yneF 1923138..1923356 (+) 219 WP_003221221.1 YneF family protein -
  NP434_RS09665 (NP434_09665) ynzD 1923430..1923603 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  NP434_RS09670 (NP434_09670) ccdA 1923823..1924530 (+) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  NP434_RS09675 (NP434_09675) yneI 1924619..1924981 (+) 363 WP_003245707.1 response regulator -
  NP434_RS09680 (NP434_09680) yneJ 1925060..1925551 (+) 492 WP_010886519.1 CcdC family protein -
  NP434_RS09685 (NP434_09685) yneK 1925582..1926010 (-) 429 WP_003231580.1 DynA interaction protein YneK -
  NP434_RS09690 (NP434_09690) cotM 1926244..1926636 (-) 393 WP_072592538.1 outer spore coat protein CotM -
  NP434_RS09695 (NP434_09695) sspP 1926717..1926863 (-) 147 WP_003221237.1 small acid-soluble spore protein P -
  NP434_RS09700 (NP434_09700) sspO 1926895..1927041 (-) 147 WP_003244839.1 acid-soluble spore protein SspO -

Sequence


Protein


Download         Length: 667 a.a.        Molecular weight: 72300.39 Da        Isoelectric Point: 4.7291

>NTDB_id=613337 NP434_RS09650 WP_014476936.1 1920450..1922453(+) (recP/tkt) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTAEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=613337 NP434_RS09650 WP_014476936.1 1920450..1922453(+) (recP/tkt) [Bacillus subtilis subsp. subtilis strain BGSC 10A5]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATTGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACTACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAGGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGCCTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCAGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACAGCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCAGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562