Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LGM29_RS16420 Genome accession   NZ_CP084770
Coordinates   3321403..3321999 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain SB610     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3316403..3326999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM29_RS16405 (LGM29_16405) helD 3316614..3318668 (-) 2055 WP_226548564.1 DNA helicase IV -
  LGM29_RS16410 (LGM29_16410) - 3318793..3319239 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LGM29_RS16415 (LGM29_16415) yccS 3319257..3321392 (+) 2136 WP_226548566.1 YccS family putative transporter -
  LGM29_RS16420 (LGM29_16420) sxy/tfoX 3321403..3321999 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  LGM29_RS16425 (LGM29_16425) - 3322017..3322322 (-) 306 WP_153351982.1 hypothetical protein -
  LGM29_RS16430 (LGM29_16430) sulA 3322348..3322857 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  LGM29_RS16435 (LGM29_16435) ompA 3323210..3324280 (+) 1071 WP_004201430.1 porin OmpA -
  LGM29_RS16440 (LGM29_16440) matP 3324491..3324943 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LGM29_RS16445 (LGM29_16445) - 3325129..3326886 (+) 1758 WP_048323579.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=613164 LGM29_RS16420 WP_004201433.1 3321403..3321999(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain SB610]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=613164 LGM29_RS16420 WP_004201433.1 3321403..3321999(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain SB610]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAAGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCGCTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5