Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RSAU_RS02500 Genome accession   NC_022222
Coordinates   529260..529829 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 6850     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 524260..534829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSAU_RS02475 (RSAU_000480) cysE 525473..526120 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RSAU_RS02480 (RSAU_000481) cysS 526104..527504 (+) 1401 WP_020977020.1 cysteine--tRNA ligase -
  RSAU_RS02485 (RSAU_000482) - 527497..527901 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RSAU_RS02490 (RSAU_000483) rlmB 527909..528655 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RSAU_RS02495 (RSAU_000484) - 528655..529179 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RSAU_RS02500 (RSAU_000485) sigH 529260..529829 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  RSAU_RS13915 (RSAU_000486) rpmG 529944..530087 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RSAU_RS02505 (RSAU_000487) secE 530143..530325 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RSAU_RS02510 (RSAU_000488) nusG 530338..530886 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RSAU_RS02515 (RSAU_000489) rplK 531067..531489 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RSAU_RS02520 (RSAU_000490) rplA 531697..532389 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RSAU_RS02525 (RSAU_000491) rplJ 532661..533161 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RSAU_RS02530 (RSAU_000492) rplL 533204..533572 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RSAU_RS02535 (RSAU_000493) - 533747..534355 (+) 609 WP_000020299.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=61311 RSAU_RS02500 WP_000872876.1 529260..529829(+) (sigH) [Staphylococcus aureus subsp. aureus 6850]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=61311 RSAU_RS02500 WP_000872876.1 529260..529829(+) (sigH) [Staphylococcus aureus subsp. aureus 6850]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment