Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LHL03_RS17930 Genome accession   NZ_CP084741
Coordinates   4019728..4020270 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium carotovorum strain A077-S18-O15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4014728..4025270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHL03_RS17920 (LHL03_17920) - 4016200..4016619 (-) 420 WP_138254640.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LHL03_RS17925 (LHL03_17925) uvrA 4016643..4019477 (-) 2835 WP_138254639.1 excinuclease ABC subunit UvrA -
  LHL03_RS17930 (LHL03_17930) ssb 4019728..4020270 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LHL03_RS17935 (LHL03_17935) - 4020427..4021038 (-) 612 WP_039470145.1 hypothetical protein -
  LHL03_RS17940 (LHL03_17940) - 4021289..4021744 (+) 456 WP_138254638.1 GNAT family N-acetyltransferase -
  LHL03_RS17945 (LHL03_17945) - 4021811..4022848 (-) 1038 WP_138254637.1 LacI family DNA-binding transcriptional regulator -
  LHL03_RS17950 (LHL03_17950) - 4022848..4023900 (-) 1053 WP_010295141.1 carbohydrate ABC transporter permease -
  LHL03_RS17955 (LHL03_17955) - 4023909..4024907 (-) 999 WP_010279314.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=613049 LHL03_RS17930 WP_039283288.1 4019728..4020270(+) (ssb) [Pectobacterium carotovorum strain A077-S18-O15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=613049 LHL03_RS17930 WP_039283288.1 4019728..4020270(+) (ssb) [Pectobacterium carotovorum strain A077-S18-O15]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGTTACACCACAGAAGTGGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGGCGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGCTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCAGCACAG
AACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461