Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LHL03_RS20440 Genome accession   NZ_CP084741
Coordinates   4585966..4587492 (+) Length   508 a.a.
NCBI ID   WP_180781377.1    Uniprot ID   -
Organism   Pectobacterium carotovorum strain A077-S18-O15     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4580966..4592492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHL03_RS20420 (LHL03_20420) - 4582383..4583309 (-) 927 WP_039508688.1 branched-chain amino acid transaminase -
  LHL03_RS20425 (LHL03_20425) ilvM 4583334..4583594 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  LHL03_RS20430 (LHL03_20430) ilvG 4583673..4585319 (-) 1647 WP_161509937.1 acetolactate synthase 2 catalytic subunit -
  LHL03_RS20435 (LHL03_20435) ilvL 4585460..4585558 (-) 99 WP_071531109.1 ilv operon leader peptide -
  LHL03_RS20440 (LHL03_20440) comM 4585966..4587492 (+) 1527 WP_180781377.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LHL03_RS20445 (LHL03_20445) - 4587550..4587888 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  LHL03_RS20450 (LHL03_20450) hdfR 4588009..4588836 (+) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  LHL03_RS20455 (LHL03_20455) yjfF 4588858..4589820 (-) 963 WP_226509675.1 galactofuranose ABC transporter, permease protein YjfF -
  LHL03_RS20460 (LHL03_20460) ytfT 4589820..4590830 (-) 1011 WP_138256315.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  LHL03_RS20465 (LHL03_20465) ytfR 4590817..4592337 (-) 1521 WP_138256318.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55445.12 Da        Isoelectric Point: 6.6907

>NTDB_id=613053 LHL03_RS20440 WP_180781377.1 4585966..4587492(+) (comM) [Pectobacterium carotovorum strain A077-S18-O15]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPSLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=613053 LHL03_RS20440 WP_180781377.1 4585966..4587492(+) (comM) [Pectobacterium carotovorum strain A077-S18-O15]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGCTTACCTGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCTCCCGCAGACTTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGGGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACCCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCATA
ACTTGCTCTTACTGGGGCCACCGGGAACCGGGAAAACCATGCTGGCAAGCCGATTAGGCAATCTGATGCCGTCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCTATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
ATTCAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAGATCTCGC
TCGCCCACAACGGCGTGCTATTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTTTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
CCCCAGCCCTTCAGGCCACTATCAGGGCGTTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTGCCTCCGGGGGTGTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAACATTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTCGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCACGCACGATAGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGGAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.458

100

0.636
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.019

100

0.467