Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   NP433_RS08145 Genome accession   NZ_CP101930
Coordinates   1541695..1542717 (+) Length   340 a.a.
NCBI ID   WP_256683415.1    Uniprot ID   -
Organism   Bacillus subtilis strain BGSC 10A5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536695..1547717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS08110 (NP433_08110) ylbE 1536995..1537234 (+) 240 WP_003232231.1 YlbE-like family protein -
  NP433_RS08115 (NP433_08115) ylbF 1537350..1537799 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  NP433_RS08120 (NP433_08120) ylbG 1537854..1538126 (+) 273 WP_015715839.1 YlbG family protein -
  NP433_RS08125 (NP433_08125) rsmD 1538449..1539003 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NP433_RS08130 (NP433_08130) coaD 1539008..1539493 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  NP433_RS08135 (NP433_08135) spoVV 1539504..1540730 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  NP433_RS08140 (NP433_08140) ylbK 1540911..1541693 (+) 783 WP_003232221.1 patatin family protein -
  NP433_RS08145 (NP433_08145) sepM 1541695..1542717 (+) 1023 WP_256683415.1 protease DdcP Regulator
  NP433_RS20970 - 1542908..1543357 (-) 450 WP_015483199.1 hypothetical protein -
  NP433_RS08155 (NP433_08155) - 1543420..1544652 (-) 1233 WP_015383591.1 nucleotidyltransferase -
  NP433_RS08160 (NP433_08160) - 1544649..1544834 (-) 186 WP_003232215.1 hypothetical protein -
  NP433_RS08165 (NP433_08165) ylbN 1544862..1545380 (+) 519 WP_256683416.1 DUF177 domain-containing protein -
  NP433_RS08170 (NP433_08170) rpmF 1545402..1545581 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  NP433_RS08175 (NP433_08175) gerR 1545727..1546308 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  NP433_RS08180 (NP433_08180) ylbP 1546365..1546847 (-) 483 WP_003244940.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37599.16 Da        Isoelectric Point: 5.9932

>NTDB_id=612875 NP433_RS08145 WP_256683415.1 1541695..1542717(+) (sepM) [Bacillus subtilis strain BGSC 10A5]
MLRKKHFSWMLVILILIAFLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=612875 NP433_RS08145 WP_256683415.1 1541695..1542717(+) (sepM) [Bacillus subtilis strain BGSC 10A5]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCTTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATTTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCTGATTATAAAAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTAGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(38-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403