Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   NP433_RS08115 Genome accession   NZ_CP101930
Coordinates   1537350..1537799 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain BGSC 10A5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532350..1542799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP433_RS08075 (NP433_08075) ctaE 1532366..1532989 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  NP433_RS08080 (NP433_08080) ctaF 1532992..1533324 (+) 333 WP_256683414.1 cytochrome c oxidase subunit IVB -
  NP433_RS08085 (NP433_08085) ctaG 1533352..1534245 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  NP433_RS08090 (NP433_08090) ylbA 1534277..1534639 (-) 363 WP_003232238.1 YugN family protein -
  NP433_RS08095 (NP433_08095) ylbB 1534779..1535225 (+) 447 WP_003221362.1 CBS domain-containing protein -
  NP433_RS08100 (NP433_08100) ylbC 1535309..1536349 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  NP433_RS08105 (NP433_08105) ylbD 1536581..1536979 (+) 399 WP_003232233.1 YlbD family protein -
  NP433_RS08110 (NP433_08110) ylbE 1536995..1537234 (+) 240 WP_003232231.1 YlbE-like family protein -
  NP433_RS08115 (NP433_08115) ylbF 1537350..1537799 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  NP433_RS08120 (NP433_08120) ylbG 1537854..1538126 (+) 273 WP_015715839.1 YlbG family protein -
  NP433_RS08125 (NP433_08125) rsmD 1538449..1539003 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NP433_RS08130 (NP433_08130) coaD 1539008..1539493 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  NP433_RS08135 (NP433_08135) spoVV 1539504..1540730 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  NP433_RS08140 (NP433_08140) ylbK 1540911..1541693 (+) 783 WP_003232221.1 patatin family protein -
  NP433_RS08145 (NP433_08145) sepM 1541695..1542717 (+) 1023 WP_256683415.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=612874 NP433_RS08115 WP_003221370.1 1537350..1537799(+) (ylbF) [Bacillus subtilis strain BGSC 10A5]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=612874 NP433_RS08115 WP_003221370.1 1537350..1537799(+) (ylbF) [Bacillus subtilis strain BGSC 10A5]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
TAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1