Detailed information NTG0061285

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EL263_RS11160
• Genome accession: NZ_AP018938
• Coordinates: 2080209..2081306 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266669.1
• Uniprot ID: C1CBK4
• Organism: Streptococcus pneumoniae strain ATCC 49619
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2075209..2086306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL263_RS11135 (SPAT_2107)	pgsA	2075730..2076275 (-)	546	WP_000712141.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EL263_RS11140 (SPAT_2108)	rodZ	2076286..2077107 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EL263_RS11145 (SPAT_2109)	yfmH	2077149..2078432 (-)	1284	WP_000170211.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EL263_RS11150 (SPAT_2110)	yfmF	2078429..2079679 (-)	1251	WP_000424275.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EL263_RS11155 (SPAT_2111)	yaaA	2079838..2080206 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EL263_RS11160 (SPAT_2112)	recF	2080209..2081306 (+)	1098	WP_000266669.1	DNA replication/repair protein RecF	Machinery gene
EL263_RS11165 (SPAT_2113)	guaB	2081357..2082835 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
EL263_RS11170 (SPAT_2114)	trpS	2082987..2084012 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
EL263_RS11175 (SPAT_2115)	-	2084218..2085840 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41960.00 Da
• Isoelectric Point: 8.6746

>NTDB_id=61285 EL263_RS11160 WP_000266669.1 2080209..2081306(+) (recF) [Streptococcus pneumoniae strain ATCC 49619]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=61285 EL263_RS11160 WP_000266669.1 2080209..2081306(+) (recF) [Streptococcus pneumoniae strain ATCC 49619]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: C1CBK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46