Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LGV34_RS06970 Genome accession   NZ_CP084719
Coordinates   1431452..1432312 (-) Length   286 a.a.
NCBI ID   WP_107363495.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 76ME     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1405800..1468629 1431452..1432312 within 0


Gene organization within MGE regions


Location: 1405800..1468629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV34_RS06870 (LGV34_06870) - 1407930..1408235 (-) 306 WP_037573366.1 YlxQ family RNA-binding protein -
  LGV34_RS06875 (LGV34_06875) rnpM 1408232..1408519 (-) 288 WP_037573364.1 RNase P modulator RnpM -
  LGV34_RS06880 (LGV34_06880) nusA 1408675..1409707 (-) 1033 Protein_1320 transcription termination factor NusA -
  LGV34_RS06885 (LGV34_06885) rimP 1409727..1410194 (-) 468 WP_103159289.1 ribosome maturation factor RimP -
  LGV34_RS06890 (LGV34_06890) - 1410321..1414631 (-) 4311 WP_037573358.1 PolC-type DNA polymerase III -
  LGV34_RS06895 (LGV34_06895) - 1414829..1416535 (-) 1707 WP_103159287.1 proline--tRNA ligase -
  LGV34_RS06900 (LGV34_06900) rseP 1416563..1417843 (-) 1281 WP_107363481.1 RIP metalloprotease RseP -
  LGV34_RS06905 (LGV34_06905) - 1417850..1418980 (-) 1131 WP_107367002.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LGV34_RS06910 (LGV34_06910) - 1418996..1419775 (-) 780 WP_037573352.1 phosphatidate cytidylyltransferase -
  LGV34_RS06915 (LGV34_06915) - 1419789..1420550 (-) 762 WP_107371972.1 isoprenyl transferase -
  LGV34_RS06920 (LGV34_06920) frr 1420700..1421254 (-) 555 WP_037573344.1 ribosome recycling factor -
  LGV34_RS06925 (LGV34_06925) pyrH 1421274..1421996 (-) 723 WP_037573342.1 UMP kinase -
  LGV34_RS06930 (LGV34_06930) tsf 1422150..1423031 (-) 882 WP_182465435.1 translation elongation factor Ts -
  LGV34_RS06935 (LGV34_06935) rpsB 1423246..1424034 (-) 789 WP_037573336.1 30S ribosomal protein S2 -
  LGV34_RS06940 (LGV34_06940) codY 1424196..1424969 (-) 774 WP_037573333.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  LGV34_RS06945 (LGV34_06945) hslU 1424984..1426393 (-) 1410 WP_037573330.1 ATP-dependent protease ATPase subunit HslU -
  LGV34_RS06950 (LGV34_06950) hslV 1426410..1426952 (-) 543 WP_037573327.1 ATP-dependent protease subunit HslV -
  LGV34_RS06955 (LGV34_06955) xerC 1426958..1427848 (-) 891 WP_037573324.1 tyrosine recombinase XerC -
  LGV34_RS06960 (LGV34_06960) trmFO 1427970..1429274 (-) 1305 WP_107363476.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LGV34_RS06965 (LGV34_06965) topA 1429287..1431356 (-) 2070 WP_037573320.1 type I DNA topoisomerase -
  LGV34_RS06970 (LGV34_06970) dprA 1431452..1432312 (-) 861 WP_107363495.1 DNA-processing protein DprA Machinery gene
  LGV34_RS06975 (LGV34_06975) sucD 1432617..1433525 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  LGV34_RS06980 (LGV34_06980) sucC 1433546..1434712 (-) 1167 WP_107363474.1 ADP-forming succinate--CoA ligase subunit beta -
  LGV34_RS06985 (LGV34_06985) - 1434937..1435206 (-) 270 WP_107363473.1 hypothetical protein -
  LGV34_RS06990 (LGV34_06990) - 1435285..1436064 (-) 780 WP_037573308.1 ribonuclease HII -
  LGV34_RS06995 (LGV34_06995) ylqF 1436045..1436935 (-) 891 WP_268216638.1 ribosome biogenesis GTPase YlqF -
  LGV34_RS07000 (LGV34_07000) - 1437167..1437529 (+) 363 WP_037573953.1 GtrA family protein -
  LGV34_RS07005 (LGV34_07005) - 1437548..1440154 (+) 2607 WP_107366128.1 YfhO family protein -
  LGV34_RS07010 (LGV34_07010) - 1440151..1442736 (+) 2586 WP_232160073.1 YfhO family protein -
  LGV34_RS07015 (LGV34_07015) - 1442791..1443432 (-) 642 WP_084276006.1 phosphatase PAP2 family protein -
  LGV34_RS07020 (LGV34_07020) rplS 1443740..1444090 (-) 351 WP_037573298.1 50S ribosomal protein L19 -
  LGV34_RS07025 (LGV34_07025) trmD 1444192..1444929 (-) 738 WP_037573295.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LGV34_RS07030 (LGV34_07030) rimM 1444926..1445429 (-) 504 WP_037573292.1 ribosome maturation factor RimM -
  LGV34_RS07035 (LGV34_07035) rpsP 1445533..1445808 (-) 276 WP_037573289.1 30S ribosomal protein S16 -
  LGV34_RS07040 (LGV34_07040) ffh 1446053..1447420 (-) 1368 WP_268216639.1 signal recognition particle protein -
  LGV34_RS07045 (LGV34_07045) - 1447434..1447766 (-) 333 WP_037573283.1 putative DNA-binding protein -
  LGV34_RS07050 (LGV34_07050) ftsY 1447753..1449108 (-) 1356 WP_037573280.1 signal recognition particle-docking protein FtsY -
  LGV34_RS07055 (LGV34_07055) smc 1449109..1452675 (-) 3567 WP_268216640.1 chromosome segregation protein SMC -
  LGV34_RS07060 (LGV34_07060) rnc 1452679..1453350 (-) 672 WP_371874978.1 ribonuclease III -
  LGV34_RS07065 (LGV34_07065) - 1453519..1453752 (-) 234 WP_019165520.1 acyl carrier protein -
  LGV34_RS07070 (LGV34_07070) fabG 1453928..1454665 (-) 738 WP_105986144.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  LGV34_RS07075 (LGV34_07075) fabD 1454658..1455584 (-) 927 WP_268216641.1 ACP S-malonyltransferase -
  LGV34_RS07080 (LGV34_07080) plsX 1455577..1456563 (-) 987 WP_037573261.1 phosphate acyltransferase PlsX -
  LGV34_RS07085 (LGV34_07085) fapR 1456556..1457125 (-) 570 WP_268216642.1 transcription factor FapR -
  LGV34_RS07090 (LGV34_07090) - 1457213..1457662 (-) 450 WP_037573255.1 ASCH domain-containing protein -
  LGV34_RS07095 (LGV34_07095) recG 1457813..1459858 (-) 2046 WP_268216643.1 ATP-dependent DNA helicase RecG -
  LGV34_RS07100 (LGV34_07100) sdaAA 1459860..1460729 (-) 870 WP_037573250.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  LGV34_RS07105 (LGV34_07105) sdaAB 1460748..1461413 (-) 666 WP_268216644.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  LGV34_RS07110 (LGV34_07110) fakA 1461571..1463229 (-) 1659 WP_268216645.1 fatty acid kinase catalytic subunit FakA -
  LGV34_RS07115 (LGV34_07115) - 1463242..1463616 (-) 375 WP_037573243.1 Asp23/Gls24 family envelope stress response protein -
  LGV34_RS07120 (LGV34_07120) rpmB 1464023..1464211 (+) 189 WP_037564748.1 50S ribosomal protein L28 -
  LGV34_RS07125 (LGV34_07125) - 1464360..1464995 (-) 636 WP_103159274.1 thiamine diphosphokinase -
  LGV34_RS07130 (LGV34_07130) rpe 1464999..1465649 (-) 651 WP_268216646.1 ribulose-phosphate 3-epimerase -
  LGV34_RS07135 (LGV34_07135) rsgA 1465649..1466524 (-) 876 WP_105962763.1 ribosome small subunit-dependent GTPase A -
  LGV34_RS07140 (LGV34_07140) - 1466786..1468063 (-) 1278 WP_037573237.1 cytochrome P450 -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32304.36 Da        Isoelectric Point: 8.8761

>NTDB_id=612740 LGV34_RS06970 WP_107363495.1 1431452..1432312(-) (dprA) [Staphylococcus chromogenes strain 76ME]
MHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLSIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDVCYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDSLAHHYALCNNIPT
IAVLGFGHFHHYPKHTQTLRSHIDKYAGGLIISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=612740 LGV34_RS06970 WP_107363495.1 1431452..1432312(-) (dprA) [Staphylococcus chromogenes strain 76ME]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCTCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGTGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATTCATTAGCCCATCATTATGCATTGTGTAACAACATCCCTACA
ATAGCTGTATTGGGATTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGATCACATATTGATAAATATGC
AGGGGGTTTAATTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAATACAAAAGGAAATTTATTGCGTGTTAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(66-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.297

98.951

0.517
  dprA Staphylococcus aureus N315

51.943

98.951

0.514
  dprA Bacillus subtilis subsp. subtilis str. 168

38.007

94.755

0.36