Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LGV34_RS03975 Genome accession   NZ_CP084719
Coordinates   836874..837503 (+) Length   209 a.a.
NCBI ID   WP_037575783.1    Uniprot ID   A0AAE5SZX5
Organism   Staphylococcus chromogenes strain 76ME     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 831874..842503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV34_RS03950 (LGV34_03950) - 832546..833556 (-) 1011 WP_105965742.1 FUSC family protein -
  LGV34_RS03955 (LGV34_03955) map 833887..834645 (+) 759 WP_037575776.1 type I methionyl aminopeptidase -
  LGV34_RS03960 (LGV34_03960) - 834741..835130 (+) 390 WP_037575778.1 hypothetical protein -
  LGV34_RS03965 (LGV34_03965) liaF 835143..835844 (+) 702 WP_037575779.1 cell wall-active antibiotics response protein LiaF -
  LGV34_RS03970 (LGV34_03970) vraS 835841..836884 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  LGV34_RS03975 (LGV34_03975) vraR 836874..837503 (+) 630 WP_037575783.1 response regulator transcription factor Regulator
  LGV34_RS03980 (LGV34_03980) - 837707..838279 (-) 573 WP_103159021.1 beta-class carbonic anhydrase -
  LGV34_RS03985 (LGV34_03985) - 838322..839590 (-) 1269 WP_268217060.1 YihY/virulence factor BrkB family protein -
  LGV34_RS03990 (LGV34_03990) - 839716..839991 (-) 276 WP_037575789.1 YtxH domain-containing protein -
  LGV34_RS03995 (LGV34_03995) - 839996..840454 (-) 459 WP_107367263.1 low molecular weight protein-tyrosine-phosphatase -
  LGV34_RS04000 (LGV34_04000) - 840587..840796 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -
  LGV34_RS04005 (LGV34_04005) - 840827..842056 (+) 1230 WP_229717316.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23432.11 Da        Isoelectric Point: 5.1755

>NTDB_id=612725 LGV34_RS03975 WP_037575783.1 836874..837503(+) (vraR) [Staphylococcus chromogenes strain 76ME]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIEKAHALKPDLILMDLVMTDMDGVEATTQIKKDLPKIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=612725 LGV34_RS03975 WP_037575783.1 836874..837503(+) (vraR) [Staphylococcus chromogenes strain 76ME]
ATGACAATTAAAGTTTTATTTGTAGATGACCACGAAATGGTAAGAATTGGTATCTCAAGTTATTTATCTACGCAGCCAGA
TATTGAAGTTGTTGGGGAAGGGGCTTCGGGTAAAGAAGCCATCGAAAAAGCGCATGCATTAAAACCTGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGAGTAGAGGCGACGACGCAAATTAAGAAAGATTTACCTAAAATCAAAGTCGTG
ATGCTTACAAGTTATATTGAGGATAAAGAAGTCTACCGTGCATTAGATGCAGGTGTAGACAGTTATATTTTAAAAACAAC
AAGCGCCAGCGACATTGCCGAAGCCATTCGCAAAACATCTAAAGGGGAATCTGTCTTTGAAGCAGAAGTACTCGTTAAAA
TGAGGAATCGTATGCGACAACGTGCAGAACTTTACGAGCTTTTAACCGAAAGAGAAATGGAAATTTTATTATTAATTTCA
AAAGGCTATTCTAATCAAGAAATTGCGAGCGCTTCACATATAACGATTAAAACCGTTAAAACACATGTTAGTAACATTTT
AAGTAAACTTGAAGTTCAAGACCGTACACAAGCAGTGATATATGCTTTCCAACATGGGCTCATAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383