Detailed information NTG0612678

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LG197_RS08400
• Genome accession: NZ_CP084714
• Coordinates: 1848114..1848980 (-)
• Length: 288 a.a.
• NCBI ID: WP_038408633.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain P1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1843114..1853980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG197_RS08365 (LG197_08375)	-	1843561..1844856 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
LG197_RS08370 (LG197_08380)	-	1844941..1845114 (-)	174	WP_013970765.1	DUF3094 family protein	-
LG197_RS08375 (LG197_08385)	-	1845248..1845877 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
LG197_RS08380 (LG197_08390)	-	1845933..1846364 (-)	432	WP_015268860.1	hypothetical protein	-
LG197_RS08385 (LG197_08395)	-	1846451..1847158 (+)	708	WP_169775152.1	energy-coupling factor ABC transporter permease	-
LG197_RS08390 (LG197_08400)	yacG	1847294..1847494 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
LG197_RS08395 (LG197_08405)	coaE	1847491..1848114 (-)	624	WP_023660627.1	dephospho-CoA kinase	-
LG197_RS08400 (LG197_08410)	pilD	1848114..1848980 (-)	867	WP_038408633.1	A24 family peptidase	Machinery gene
LG197_RS08405 (LG197_08415)	-	1848983..1850191 (-)	1209	WP_274396366.1	type II secretion system F family protein	-
LG197_RS08410 (LG197_08420)	-	1850407..1850817 (+)	411	WP_169775154.1	pilin	-
LG197_RS08420 (LG197_08430)	-	1851209..1852074 (+)	866	Protein_1639	IS3 family transposase	-
LG197_RS08425 (LG197_08435)	-	1852139..1853301 (+)	1163	WP_156858879.1	IS3 family transposase	-
LG197_RS08430 (LG197_08440)	-	1853307..1853597 (+)	291	Protein_1641	IS3 family transposase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32031.21 Da
• Isoelectric Point: 7.9596

>NTDB_id=612678 LG197_RS08400 WP_038408633.1 1848114..1848980(-) (pilD) [Pseudomonas asiatica strain P1]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=612678 LG197_RS08400 WP_038408633.1 1848114..1848980(-) (pilD) [Pseudomonas asiatica strain P1]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCAGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAAT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGCGCGCATCGGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAGACCCGCATAAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	52.5	97.222	0.51
pilD	Acinetobacter nosocomialis M2	51.786	97.222	0.503
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476