Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LG401_RS07650 Genome accession   NZ_CP084711
Coordinates   1533235..1534137 (+) Length   300 a.a.
NCBI ID   WP_034662389.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1528235..1539137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS07630 (LG401_07630) - 1528901..1530637 (+) 1737 WP_066030915.1 glycosyltransferase -
  LG401_RS07635 (LG401_07635) - 1530634..1530909 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  LG401_RS07640 (LG401_07640) sucC 1531086..1532246 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  LG401_RS07645 (LG401_07645) sucD 1532269..1533171 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  LG401_RS07650 (LG401_07650) dprA 1533235..1534137 (+) 903 WP_034662389.1 DNA-processing protein DprA Machinery gene
  LG401_RS07655 (LG401_07655) topA 1534331..1536406 (+) 2076 WP_060596250.1 type I DNA topoisomerase -
  LG401_RS07660 (LG401_07660) trmFO 1536477..1537781 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LG401_RS07665 (LG401_07665) xerC 1537844..1538761 (+) 918 WP_060596252.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34086.37 Da        Isoelectric Point: 8.5955

>NTDB_id=612621 LG401_RS07650 WP_034662389.1 1533235..1534137(+) (dprA) [Bacillus pumilus strain AR03]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETQHFKQDRSLQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=612621 LG401_RS07650 WP_034662389.1 1533235..1534137(+) (dprA) [Bacillus pumilus strain AR03]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACAACATTTCAAACAGGATCGATCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATACCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATTCGGAATAAAGGGAAAACCATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTGAAACCAGAAAAGTGGCATT
TCCCAATGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCGCTC
ATTACCGCGTATCAAGCACTTGAGCAAGGTAAAGAGGTATTTGCGGTTGCAGGATCTATCTTTGATCCTAATTCCACAGG
ACCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37