Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LG401_RS05460 Genome accession   NZ_CP084711
Coordinates   1119624..1119821 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114624..1124821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS05430 (LG401_05430) - 1115034..1115213 (+) 180 WP_034663316.1 YjzC family protein -
  LG401_RS05435 (LG401_05435) - 1115382..1116647 (+) 1266 WP_034663308.1 MFS transporter -
  LG401_RS05440 (LG401_05440) - 1116766..1116960 (-) 195 WP_003211779.1 YjzD family protein -
  LG401_RS05445 (LG401_05445) - 1117172..1117912 (+) 741 WP_060595993.1 hypothetical protein -
  LG401_RS05450 (LG401_05450) - 1117988..1118560 (+) 573 WP_212040941.1 nad binding enzyme -
  LG401_RS05455 (LG401_05455) med 1118651..1119613 (+) 963 WP_034663299.1 BMP family ABC transporter substrate-binding protein Regulator
  LG401_RS05460 (LG401_05460) comZ 1119624..1119821 (+) 198 WP_003211983.1 ComZ family protein Regulator
  LG401_RS05465 (LG401_05465) - 1119831..1120064 (-) 234 WP_034663296.1 hypothetical protein -
  LG401_RS05470 (LG401_05470) - 1120234..1121172 (+) 939 WP_106156897.1 beta-ketoacyl-ACP synthase III -
  LG401_RS05475 (LG401_05475) fabF 1121194..1122435 (+) 1242 WP_212040942.1 beta-ketoacyl-ACP synthase II -
  LG401_RS05480 (LG401_05480) - 1122513..1123307 (+) 795 WP_060595996.1 DUF2268 domain-containing protein -
  LG401_RS05485 (LG401_05485) - 1123476..1124456 (+) 981 WP_226509425.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=612610 LG401_RS05460 WP_003211983.1 1119624..1119821(+) (comZ) [Bacillus pumilus strain AR03]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=612610 LG401_RS05460 WP_003211983.1 1119624..1119821(+) (comZ) [Bacillus pumilus strain AR03]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
GGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTTG
GGAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677