Detailed information NTG0612556

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LGQ02_RS18265
• Genome accession: NZ_CP084703
• Coordinates: 3763319..3764446 (-)
• Length: 375 a.a.
• NCBI ID: WP_226515712.1
• Uniprot ID: -
• Organism: Bacillus shivajii strain JCM 32183
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3758319..3769446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGQ02_RS18260 (LGQ02_18260)	degU	3762483..3763184 (-)	702	WP_226515711.1	response regulator transcription factor	Regulator
LGQ02_RS18265 (LGQ02_18265)	degS	3763319..3764446 (-)	1128	WP_226515712.1	sensor histidine kinase	Regulator
LGQ02_RS18270 (LGQ02_18270)	-	3764811..3765446 (+)	636	WP_226515713.1	YigZ family protein	-
LGQ02_RS18275 (LGQ02_18275)	-	3765680..3766612 (-)	933	WP_226515714.1	hypothetical protein	-
LGQ02_RS18280 (LGQ02_18280)	-	3766937..3767953 (+)	1017	WP_226515715.1	LCP family protein	-
LGQ02_RS18285 (LGQ02_18285)	-	3768222..3768869 (+)	648	WP_226515716.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43199.66 Da
• Isoelectric Point: 5.7826

>NTDB_id=612556 LGQ02_RS18265 WP_226515712.1 3763319..3764446(-) (degS) [Bacillus shivajii strain JCM 32183]
MDKTLETIVEKMIETVDSSKEQIFEIGEESRLEYDQLKSELQQVQSKVVEVIDKLERMELHSRFARNRLAEVSKNFSKYS
DKEVREAYEQANDYQVQLAVLSQEETQLRQRRDQIERRLMKLKDTVERSEALVNQINVVMHYLTGDLKQVSEMVADAVEM
QKLGLKIIQAQEEERKRLSREIHDGPAQMMANVMLRSELVEKIYDEKGINAALQEISDLRKMVKDSLAEVRRIIYDLRPM
ALDDLGLIPTLRKYLTNFAEHTGLNISFKNMGKERRLPSEMEVALFRFVQEAAQNAHKHANPTELLVKVELKPSHAIVII
KDDGKGFDPSVKKEGSFGLIGMKERVNMLDGQMSIDSKPNRGTLIIVQIPITSNE

Nucleotide

• Length: 1128 bp

>NTDB_id=612556 LGQ02_RS18265 WP_226515712.1 3763319..3764446(-) (degS) [Bacillus shivajii strain JCM 32183]
ATGGATAAAACTTTAGAAACCATTGTAGAAAAAATGATAGAGACCGTTGACTCTAGTAAAGAGCAAATTTTCGAAATTGG
AGAAGAGTCCCGTTTAGAATATGATCAACTAAAAAGTGAACTCCAGCAAGTGCAATCAAAAGTAGTTGAAGTGATTGATA
AGCTGGAGAGGATGGAGCTCCACTCTCGTTTTGCCCGTAACCGCCTTGCTGAAGTAAGCAAAAACTTCAGTAAGTACTCT
GATAAAGAAGTACGCGAAGCCTACGAGCAAGCAAATGATTACCAAGTACAATTAGCGGTTCTATCGCAAGAAGAAACGCA
GCTTCGTCAGCGCAGAGATCAAATTGAACGGCGACTCATGAAATTAAAGGATACGGTTGAACGTTCAGAGGCACTTGTAA
ACCAAATCAATGTTGTCATGCATTATTTAACGGGTGACTTAAAGCAAGTTTCTGAAATGGTTGCAGATGCCGTTGAAATG
CAAAAGCTAGGACTAAAAATTATCCAGGCACAAGAAGAAGAGCGTAAGCGGTTATCTAGAGAAATACATGATGGTCCAGC
ACAAATGATGGCGAACGTCATGCTTCGGTCTGAGCTTGTAGAAAAAATTTATGATGAAAAAGGAATAAACGCAGCGTTAC
AAGAGATTTCAGACTTGAGAAAAATGGTGAAAGATTCACTCGCTGAAGTCCGTCGTATCATATACGACCTGCGTCCGATG
GCGCTTGATGATTTAGGTCTTATTCCAACACTTAGAAAGTATTTAACGAACTTTGCTGAACATACAGGCTTAAACATCTC
CTTTAAAAATATGGGCAAAGAAAGAAGGTTGCCTTCAGAAATGGAAGTAGCTCTCTTTCGCTTTGTGCAAGAAGCTGCAC
AAAATGCTCATAAACATGCAAACCCAACAGAGTTACTTGTCAAAGTAGAACTGAAACCATCTCATGCGATCGTTATTATT
AAAGACGACGGGAAAGGGTTTGATCCTTCGGTGAAAAAAGAAGGTTCGTTTGGGTTAATTGGAATGAAAGAGCGAGTGAA
TATGTTAGATGGGCAAATGAGTATTGATTCAAAACCTAACCGAGGGACCTTAATCATTGTTCAAATCCCAATAACGAGCA
ACGAGTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (282-371)

• Histidine kinase (HisKA_3) (174-242)

• Sensor protein DegS (DegS) (6-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	54.521	100	0.547