Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LGQ02_RS18260 Genome accession   NZ_CP084703
Coordinates   3762483..3763184 (-) Length   233 a.a.
NCBI ID   WP_226515711.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3757483..3768184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS18260 (LGQ02_18260) degU 3762483..3763184 (-) 702 WP_226515711.1 response regulator transcription factor Regulator
  LGQ02_RS18265 (LGQ02_18265) degS 3763319..3764446 (-) 1128 WP_226515712.1 sensor histidine kinase Regulator
  LGQ02_RS18270 (LGQ02_18270) - 3764811..3765446 (+) 636 WP_226515713.1 YigZ family protein -
  LGQ02_RS18275 (LGQ02_18275) - 3765680..3766612 (-) 933 WP_226515714.1 hypothetical protein -
  LGQ02_RS18280 (LGQ02_18280) - 3766937..3767953 (+) 1017 WP_226515715.1 LCP family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26369.12 Da        Isoelectric Point: 5.0719

>NTDB_id=612555 LGQ02_RS18260 WP_226515711.1 3762483..3763184(-) (degU) [Bacillus shivajii strain JCM 32183]
MSEVENQIKIVLIDDHQLFREGVKRILSLEKNIEVVAEGSDGDEVLDLVREHQPDVVLMDINMPNVNGVEATKTLVETFP
NVKVLILSIHDDEAYVTHVLKTGASGYLLKEMDTEALLEAVKVVGEGGAYIHPKVTHNLISEYRRLANDDKPETEVGFRE
VEYRRPLHLLTRRECEVLQLMTDGKSNRSIGETLYISEKTVKNHVSNILQKMNMNDRTQAVVDAIKNGWVKVN

Nucleotide


Download         Length: 702 bp        

>NTDB_id=612555 LGQ02_RS18260 WP_226515711.1 3762483..3763184(-) (degU) [Bacillus shivajii strain JCM 32183]
ATGAGTGAAGTAGAGAATCAAATCAAAATCGTATTAATTGATGACCACCAATTGTTTCGTGAAGGCGTAAAACGAATACT
GTCTTTAGAGAAAAACATTGAAGTCGTTGCAGAAGGTAGTGACGGCGATGAGGTCCTTGACCTTGTTCGTGAACACCAGC
CTGATGTCGTTTTAATGGATATTAATATGCCGAATGTGAATGGAGTCGAAGCAACAAAAACCTTAGTTGAAACATTTCCG
AATGTAAAAGTACTGATTCTCTCTATTCATGACGATGAGGCATACGTGACACACGTTTTAAAAACAGGAGCTTCTGGTTA
CTTGTTGAAAGAGATGGATACAGAAGCGCTGCTAGAAGCAGTGAAAGTTGTAGGTGAAGGTGGAGCTTATATTCACCCGA
AAGTAACGCATAACCTCATCTCTGAATATCGTCGTCTTGCTAATGATGATAAACCAGAAACAGAAGTCGGTTTCCGTGAA
GTAGAATACCGTAGACCTCTACATTTACTAACTCGTCGTGAGTGTGAAGTGTTACAACTGATGACAGACGGTAAAAGTAA
TCGTTCGATTGGCGAGACGTTATATATTAGCGAAAAAACAGTGAAAAACCATGTAAGTAACATTTTGCAAAAAATGAATA
TGAATGACCGAACTCAAGCAGTTGTTGACGCAATTAAAAACGGCTGGGTAAAAGTGAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)

Bacterial regulatory proteins, luxR family (GerE)

(169-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

72.052

98.283

0.708