Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LGQ02_RS07660 Genome accession   NZ_CP084703
Coordinates   1573935..1574720 (+) Length   261 a.a.
NCBI ID   WP_226517603.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568935..1579720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS07645 (LGQ02_07645) ahrC 1570048..1570497 (+) 450 WP_226517600.1 transcriptional regulator AhrC/ArgR -
  LGQ02_RS07650 (LGQ02_07650) recN 1570523..1572253 (+) 1731 WP_226517601.1 DNA repair protein RecN Machinery gene
  LGQ02_RS07655 (LGQ02_07655) spoIVB 1572384..1573661 (+) 1278 WP_226517602.1 SpoIVB peptidase -
  LGQ02_RS07660 (LGQ02_07660) spo0A 1573935..1574720 (+) 786 WP_226517603.1 sporulation transcription factor Spo0A Regulator
  LGQ02_RS07665 (LGQ02_07665) steA 1575298..1576359 (+) 1062 WP_226517604.1 putative cytokinetic ring protein SteA -
  LGQ02_RS07670 (LGQ02_07670) - 1576349..1577008 (+) 660 WP_226517605.1 glycosyltransferase family 2 protein -
  LGQ02_RS07675 (LGQ02_07675) - 1576993..1577787 (+) 795 WP_226517606.1 hypothetical protein -
  LGQ02_RS07680 (LGQ02_07680) - 1577833..1578066 (-) 234 WP_226518250.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29234.74 Da        Isoelectric Point: 5.9678

>NTDB_id=612540 LGQ02_RS07660 WP_226517603.1 1573935..1574720(+) (spo0A) [Bacillus shivajii strain JCM 32183]
MKKVNVCVADDNRELVNLLEDYINSQEDMDVIGTAYNGQECLDLIDEKEPDVLILDIIMPHLDGLAVLEKLNSRQLAKRP
NIIMLTAFGQEDVTKKAVELGAAYYVLKPFDMDTLMNKVRDVSGNGSTYVKSPAAPHGQRENKPMNLDASITSIIHEIGV
PAHIKGYMYLREAITMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIESISKMFGYTVSVSKAK
PTNFEFIAMVADKLRIEHKVS

Nucleotide


Download         Length: 786 bp        

>NTDB_id=612540 LGQ02_RS07660 WP_226517603.1 1573935..1574720(+) (spo0A) [Bacillus shivajii strain JCM 32183]
GTGAAAAAGGTAAATGTGTGTGTCGCAGATGATAATCGTGAACTTGTAAATTTATTAGAGGATTATATTAATTCGCAAGA
GGATATGGATGTTATTGGAACAGCTTATAATGGGCAAGAGTGTTTAGACTTAATTGATGAAAAAGAGCCGGATGTTTTAA
TTTTAGATATTATTATGCCTCATTTAGATGGATTGGCAGTTTTAGAGAAGTTAAATAGTCGCCAATTAGCGAAACGTCCT
AATATTATAATGCTAACTGCATTCGGGCAAGAAGATGTAACAAAAAAGGCGGTTGAGCTAGGAGCTGCTTACTATGTACT
TAAGCCATTTGATATGGATACATTAATGAATAAAGTGCGTGACGTAAGCGGGAACGGTTCTACCTATGTAAAGTCTCCTG
CAGCACCTCACGGTCAAAGAGAGAACAAACCGATGAACTTAGATGCAAGTATTACGAGTATTATTCATGAAATCGGTGTC
CCGGCTCACATTAAAGGGTATATGTATTTAAGAGAAGCAATTACTATGGTTTATAACGATATTGAACTATTAGGATCCAT
TACAAAAGTTCTTTACCCAGATATTGCAAAGAAATATAACACAACGGCAAGCCGTGTTGAGCGTGCGATCCGTCATGCCA
TTGAAGTAGCATGGAGCCGTGGGAACATTGAGTCTATCTCAAAAATGTTCGGCTACACAGTAAGTGTTTCTAAAGCAAAA
CCAACGAACTTTGAATTTATTGCGATGGTGGCAGATAAGCTACGAATTGAGCATAAAGTAAGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(151-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

74.906

100

0.766