Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LGQ02_RS07650 Genome accession   NZ_CP084703
Coordinates   1570523..1572253 (+) Length   576 a.a.
NCBI ID   WP_226517601.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565523..1577253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS07630 (LGQ02_07630) - 1566299..1566922 (+) 624 WP_226517598.1 hypothetical protein -
  LGQ02_RS07635 (LGQ02_07635) dxs 1566932..1568821 (+) 1890 WP_226517599.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LGQ02_RS07640 (LGQ02_07640) - 1568826..1569629 (+) 804 WP_404802385.1 TlyA family RNA methyltransferase -
  LGQ02_RS07645 (LGQ02_07645) ahrC 1570048..1570497 (+) 450 WP_226517600.1 transcriptional regulator AhrC/ArgR -
  LGQ02_RS07650 (LGQ02_07650) recN 1570523..1572253 (+) 1731 WP_226517601.1 DNA repair protein RecN Machinery gene
  LGQ02_RS07655 (LGQ02_07655) spoIVB 1572384..1573661 (+) 1278 WP_226517602.1 SpoIVB peptidase -
  LGQ02_RS07660 (LGQ02_07660) spo0A 1573935..1574720 (+) 786 WP_226517603.1 sporulation transcription factor Spo0A Regulator
  LGQ02_RS07665 (LGQ02_07665) steA 1575298..1576359 (+) 1062 WP_226517604.1 putative cytokinetic ring protein SteA -
  LGQ02_RS07670 (LGQ02_07670) - 1576349..1577008 (+) 660 WP_226517605.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65938.75 Da        Isoelectric Point: 4.7986

>NTDB_id=612539 LGQ02_RS07650 WP_226517601.1 1570523..1572253(+) (recN) [Bacillus shivajii strain JCM 32183]
MLMELSIRNFAIIDTMTVSFDEGLTVLTGETGAGKSIIIDAIGLLIGGRGSVEFVRHGSKRAEIEGLFSVDRHHDVYKLF
NDVGIETGEEETILLKREITKQGKSICRVNGKLVTLAVLRQIGQMIVDIHGQHEHQQLLQEDKHLTLLDRFAEDHIKKPK
HEYKELYQSFIKKRKELKQLSENEQEMAQRLDLIKYQYHEITEANIQPEEDTRLTEEKKRLSNSEELFKTTHGAYEALYG
DNRGLEWVMVAMNQIEEAAEMDEQLHKLKETITNCYYLLEEATYSLRDYHENIEFDPDRLNEIELRLNELTQLKRKYGET
VNEVLEYASKIEDEMDTLNNRDERLQQWESDLAGIAKDLIVEGKHLTEVRKYEAKRLEENIQTELEDLYMKNTKFQVEFH
EHSFQEEDLLSLSKSLPITKEGIDDISFMVATNKGEPLKPLAKVASGGEISRMILALKKILATHEGVTSLIFDEVDTGVS
GRVAQAIAEKIHHISVGSQVLCITHLPQVAAMADTHLFISKGEDSERVTTSVKPLNEEEQIEELSRMISGVEITELTKEH
AKELLEQANQIKQSLG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=612539 LGQ02_RS07650 WP_226517601.1 1570523..1572253(+) (recN) [Bacillus shivajii strain JCM 32183]
ATGTTAATGGAGCTCTCTATCCGTAACTTTGCAATCATCGATACAATGACTGTTTCCTTTGATGAAGGGCTGACTGTTTT
AACGGGGGAAACTGGAGCGGGGAAGTCAATTATTATTGATGCAATTGGATTATTAATTGGTGGAAGAGGATCTGTTGAAT
TTGTTCGTCACGGGAGTAAACGAGCAGAGATTGAAGGACTTTTTTCTGTGGACAGGCATCATGATGTATATAAACTTTTC
AATGATGTAGGAATTGAAACAGGTGAAGAAGAGACAATTTTATTGAAAAGAGAAATAACAAAGCAAGGAAAAAGTATCTG
CCGTGTTAATGGAAAATTGGTGACTTTAGCAGTTTTACGTCAAATCGGGCAAATGATTGTTGACATTCATGGACAACATG
AACACCAGCAGCTGCTACAAGAAGATAAACATTTAACATTACTCGACCGATTTGCAGAAGACCATATTAAAAAACCAAAG
CATGAATATAAGGAATTATACCAATCATTTATAAAGAAACGAAAAGAATTAAAGCAATTGTCGGAAAATGAACAAGAGAT
GGCTCAACGATTAGATTTAATTAAATATCAATATCACGAGATTACAGAAGCGAATATACAGCCTGAAGAAGACACCCGTT
TAACAGAAGAGAAAAAGCGGCTTTCAAATAGTGAAGAATTATTTAAAACAACACACGGTGCTTATGAGGCTTTATACGGA
GATAACCGAGGGCTAGAATGGGTAATGGTCGCTATGAATCAAATCGAAGAAGCTGCAGAGATGGATGAGCAATTACATAA
ATTAAAAGAGACAATTACGAATTGTTATTACTTATTAGAAGAAGCAACGTATTCACTTCGTGATTATCATGAAAATATTG
AATTTGATCCTGATCGTTTAAACGAGATCGAATTAAGGTTAAATGAATTAACCCAACTGAAACGAAAATATGGTGAAACC
GTTAATGAAGTTTTAGAATATGCTTCAAAAATTGAAGATGAAATGGATACATTAAATAATCGAGATGAACGACTTCAGCA
ATGGGAAAGTGACTTGGCAGGCATTGCAAAAGACCTAATAGTTGAAGGGAAGCATTTAACGGAAGTTAGGAAGTATGAAG
CGAAAAGACTGGAGGAAAATATTCAGACAGAACTCGAAGACTTATATATGAAAAATACAAAGTTCCAAGTGGAATTCCAC
GAACATTCGTTTCAAGAAGAGGACTTACTTTCATTATCGAAAAGTTTACCAATAACAAAAGAAGGCATAGATGATATCTC
ATTTATGGTTGCAACGAATAAAGGAGAACCGTTAAAGCCTCTTGCAAAAGTTGCATCTGGTGGAGAAATCTCAAGAATGA
TTCTTGCTTTAAAGAAGATCTTAGCAACCCATGAAGGGGTCACATCTTTAATATTTGATGAAGTTGATACTGGTGTAAGT
GGTAGGGTGGCTCAAGCAATTGCCGAAAAAATTCATCATATCTCTGTTGGATCACAAGTTTTATGTATTACACATTTGCC
TCAAGTAGCTGCAATGGCTGACACACACTTATTTATTTCTAAAGGTGAAGACAGTGAACGAGTGACAACTTCCGTTAAAC
CTTTAAATGAAGAAGAACAAATTGAGGAACTTAGCCGAATGATTTCTGGGGTGGAAATTACTGAGTTAACAAAAGAACAT
GCAAAAGAATTATTGGAACAAGCAAACCAAATTAAACAATCGTTGGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.878

99.653

0.547