Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LGQ02_RS00600 | Genome accession | NZ_CP084703 |
| Coordinates | 124571..127015 (+) | Length | 814 a.a. |
| NCBI ID | WP_226516343.1 | Uniprot ID | - |
| Organism | Bacillus shivajii strain JCM 32183 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 119571..132015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGQ02_RS00575 (LGQ02_00575) | - | 119655..120848 (+) | 1194 | WP_226514668.1 | ISL3 family transposase | - |
| LGQ02_RS00580 (LGQ02_00580) | - | 121517..122230 (+) | 714 | WP_226516339.1 | MgtC/SapB family protein | - |
| LGQ02_RS00585 (LGQ02_00585) | - | 122447..122917 (+) | 471 | WP_226516340.1 | CtsR family transcriptional regulator | - |
| LGQ02_RS00590 (LGQ02_00590) | - | 122943..123479 (+) | 537 | WP_226516341.1 | UvrB/UvrC motif-containing protein | - |
| LGQ02_RS00595 (LGQ02_00595) | - | 123483..124574 (+) | 1092 | WP_226516342.1 | protein arginine kinase | - |
| LGQ02_RS00600 (LGQ02_00600) | clpC | 124571..127015 (+) | 2445 | WP_226516343.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| LGQ02_RS00605 (LGQ02_00605) | radA | 127174..128580 (+) | 1407 | WP_226516344.1 | DNA repair protein RadA | Machinery gene |
| LGQ02_RS00610 (LGQ02_00610) | disA | 128555..129637 (+) | 1083 | WP_226516345.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| LGQ02_RS00615 (LGQ02_00615) | - | 129851..130954 (+) | 1104 | WP_226516346.1 | PIN/TRAM domain-containing protein | - |
| LGQ02_RS00620 (LGQ02_00620) | ispD | 130969..131661 (+) | 693 | WP_226516347.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 814 a.a. Molecular weight: 90722.10 Da Isoelectric Point: 5.5194
>NTDB_id=612529 LGQ02_RS00600 WP_226516343.1 124571..127015(+) (clpC) [Bacillus shivajii strain JCM 32183]
MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALSALGLSSDKIQTEVENLIGRGEEKTKQVHY
TPRAKKVIELSMDEARKLGHSYVGTEHVLLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSSESSNSQQQSANGGGS
NVNTPTLDSLARDLTAIAKEDQIDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPETLRN
KRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQAANVILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATT
LDEYRKYIEKDAALERRFQPIQVDEPTLEESTQILKGLRDRYEAHHRVTITDDAIEAAVKLSDRYISDRFLPDKAIDLID
EAASKVRLRSYTAPPNLKEMEQKLEETRKEKDAAVQSQEFEKAASLRDSEQRIREELDDLKKQWKEKQGQENSEVVTDDI
AMVVSSWTGIPVSKLAEEETDRLLRMEEILHNRVIGQNEAVEAVSKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR
AVAESLFGDEDAIIRIDMSEYMEKHTTSRLVGSPPGYVGHDEGGQLTEKVRRKPYSVILLDEVEKAHPEVFNILLQVLED
GFLTDSKGRRVDFRNTAIIMTSNVGASTLRQAKSLGFTAQRDGEDYKDMKGKVMGELKKSFRPEFLNRIDEIIVFHSLEK
DHIKEIITLMSDQLKKRLTEQGIDFELTQAAKDKIADEGFDPEYGARPLRRALQKQVEDRLSEELLRGTISKGQKVIIDV
KDEEFVVTSEAMTS
MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALSALGLSSDKIQTEVENLIGRGEEKTKQVHY
TPRAKKVIELSMDEARKLGHSYVGTEHVLLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSSESSNSQQQSANGGGS
NVNTPTLDSLARDLTAIAKEDQIDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPETLRN
KRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQAANVILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATT
LDEYRKYIEKDAALERRFQPIQVDEPTLEESTQILKGLRDRYEAHHRVTITDDAIEAAVKLSDRYISDRFLPDKAIDLID
EAASKVRLRSYTAPPNLKEMEQKLEETRKEKDAAVQSQEFEKAASLRDSEQRIREELDDLKKQWKEKQGQENSEVVTDDI
AMVVSSWTGIPVSKLAEEETDRLLRMEEILHNRVIGQNEAVEAVSKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR
AVAESLFGDEDAIIRIDMSEYMEKHTTSRLVGSPPGYVGHDEGGQLTEKVRRKPYSVILLDEVEKAHPEVFNILLQVLED
GFLTDSKGRRVDFRNTAIIMTSNVGASTLRQAKSLGFTAQRDGEDYKDMKGKVMGELKKSFRPEFLNRIDEIIVFHSLEK
DHIKEIITLMSDQLKKRLTEQGIDFELTQAAKDKIADEGFDPEYGARPLRRALQKQVEDRLSEELLRGTISKGQKVIIDV
KDEEFVVTSEAMTS
Nucleotide
Download Length: 2445 bp
>NTDB_id=612529 LGQ02_RS00600 WP_226516343.1 124571..127015(+) (clpC) [Bacillus shivajii strain JCM 32183]
ATGATGTTTGGACGTTTTACAGAAAGAGCACAAAAAGTCTTAGCTTTAGCACAAGAAGAAGCCGTACGATTAGGTCATAA
CAATATTGGTACTGAGCACATTCTTCTTGGCTTAGTTCGCGAAGGAGAAGGAATTGCTGCAAAGGCACTGAGTGCCCTTG
GATTAAGCTCTGATAAAATTCAAACTGAAGTTGAAAATTTAATTGGACGTGGGGAAGAGAAAACAAAGCAAGTGCACTAT
ACGCCACGCGCGAAAAAAGTCATTGAACTTTCTATGGATGAGGCTAGAAAACTAGGACACTCCTATGTTGGAACTGAACA
TGTGCTTCTTGGTTTAATCCGTGAAGGAGAAGGGGTTGCAGCACGAGTCTTAAATAACTTAGGAGTCAGCTTAAATAAAG
CTAGGCAGCAAGTATTACAGCTGTTAGGAAGCAGCGAATCTTCAAATAGTCAGCAGCAGTCGGCTAATGGAGGTGGAAGT
AATGTGAATACACCGACATTAGATAGTTTAGCGCGAGACCTAACAGCGATTGCAAAAGAAGACCAAATCGATCCTGTTAT
TGGTCGTTCAAAAGAAATTGAACGTGTCATTCAAGTGTTAAGCCGTCGTACTAAAAACAACCCAGTTCTAATTGGAGAAC
CCGGCGTTGGTAAAACCGCCATTGCAGAAGGACTTGCGCAACAAATTATAAACAATGAGGTTCCTGAAACATTACGAAAT
AAACGTGTAATGACATTAGATATGGGAACAGTTGTTGCAGGAACGAAATACCGTGGTGAGTTTGAGGATCGCTTGAAAAA
AGTGATGGAAGAAATTCGTCAAGCAGCTAATGTCATTTTATTCATCGATGAGCTTCACACATTAATTGGTGCAGGGGGTG
CTGAAGGTGCAATTGATGCGTCGAATATTTTAAAACCATCCCTTGCACGCGGAGAGTTGCAATGTATTGGTGCAACCACT
TTAGATGAATATCGTAAATATATTGAAAAGGATGCAGCATTAGAACGAAGATTCCAGCCAATTCAAGTTGATGAACCAAC
ACTAGAAGAGTCAACACAAATATTAAAAGGACTGCGTGATCGTTATGAAGCGCACCATCGTGTAACAATTACTGATGATG
CTATTGAGGCGGCTGTAAAACTATCAGATCGTTACATTTCTGATCGATTTTTACCGGATAAAGCGATTGACTTAATTGAT
GAAGCAGCATCAAAAGTTCGTCTAAGGTCTTACACAGCACCGCCGAACTTAAAAGAGATGGAGCAAAAACTTGAAGAAAC
ACGCAAAGAGAAGGATGCAGCTGTACAAAGTCAAGAATTTGAAAAAGCAGCATCGTTAAGAGATAGCGAGCAACGAATTC
GCGAAGAATTAGATGACTTGAAAAAGCAATGGAAAGAAAAACAAGGTCAAGAGAATTCCGAAGTTGTCACGGATGATATT
GCGATGGTTGTTTCAAGCTGGACGGGAATACCAGTAAGTAAACTTGCTGAAGAAGAAACAGATCGCTTACTTCGTATGGA
AGAAATTCTTCATAATCGAGTCATTGGTCAAAACGAGGCAGTGGAAGCTGTTTCCAAAGCAATTCGTAGAGCTAGAGCCG
GGCTTAAGGATCCAAAACGTCCGATTGGCTCGTTTATTTTCCTTGGACCTACAGGTGTCGGTAAAACAGAACTAGCTAGA
GCAGTTGCAGAATCATTATTCGGAGACGAAGATGCGATTATTCGAATCGATATGTCAGAGTATATGGAAAAGCATACAAC
GTCTCGTCTTGTCGGTTCACCACCGGGATATGTTGGCCATGACGAAGGTGGTCAATTAACGGAAAAAGTTCGTAGAAAGC
CATACTCAGTCATCTTGCTTGATGAAGTAGAGAAGGCTCACCCTGAAGTATTTAATATTCTTCTCCAAGTACTTGAAGAT
GGGTTCTTAACGGACTCAAAAGGGCGCCGTGTCGATTTCCGGAATACAGCGATCATTATGACCTCTAATGTTGGAGCTAG
TACGTTACGACAAGCGAAAAGCTTAGGATTTACAGCACAGCGAGATGGTGAAGATTATAAAGATATGAAAGGAAAAGTAA
TGGGAGAGTTAAAGAAGAGTTTCCGTCCGGAATTCTTAAACAGAATTGATGAAATCATCGTCTTCCATTCACTAGAGAAA
GATCATATTAAAGAGATCATTACGTTAATGTCAGATCAGCTGAAAAAGCGTCTCACAGAGCAAGGCATTGATTTTGAGTT
AACGCAAGCGGCGAAAGATAAAATTGCAGATGAAGGCTTTGACCCTGAATATGGTGCAAGACCATTACGTCGAGCATTGC
AAAAGCAAGTAGAGGACCGTCTCTCTGAAGAGTTATTACGAGGCACAATTTCAAAAGGTCAGAAAGTAATTATTGATGTG
AAGGATGAAGAGTTTGTCGTTACTTCGGAAGCGATGACAAGCTAA
ATGATGTTTGGACGTTTTACAGAAAGAGCACAAAAAGTCTTAGCTTTAGCACAAGAAGAAGCCGTACGATTAGGTCATAA
CAATATTGGTACTGAGCACATTCTTCTTGGCTTAGTTCGCGAAGGAGAAGGAATTGCTGCAAAGGCACTGAGTGCCCTTG
GATTAAGCTCTGATAAAATTCAAACTGAAGTTGAAAATTTAATTGGACGTGGGGAAGAGAAAACAAAGCAAGTGCACTAT
ACGCCACGCGCGAAAAAAGTCATTGAACTTTCTATGGATGAGGCTAGAAAACTAGGACACTCCTATGTTGGAACTGAACA
TGTGCTTCTTGGTTTAATCCGTGAAGGAGAAGGGGTTGCAGCACGAGTCTTAAATAACTTAGGAGTCAGCTTAAATAAAG
CTAGGCAGCAAGTATTACAGCTGTTAGGAAGCAGCGAATCTTCAAATAGTCAGCAGCAGTCGGCTAATGGAGGTGGAAGT
AATGTGAATACACCGACATTAGATAGTTTAGCGCGAGACCTAACAGCGATTGCAAAAGAAGACCAAATCGATCCTGTTAT
TGGTCGTTCAAAAGAAATTGAACGTGTCATTCAAGTGTTAAGCCGTCGTACTAAAAACAACCCAGTTCTAATTGGAGAAC
CCGGCGTTGGTAAAACCGCCATTGCAGAAGGACTTGCGCAACAAATTATAAACAATGAGGTTCCTGAAACATTACGAAAT
AAACGTGTAATGACATTAGATATGGGAACAGTTGTTGCAGGAACGAAATACCGTGGTGAGTTTGAGGATCGCTTGAAAAA
AGTGATGGAAGAAATTCGTCAAGCAGCTAATGTCATTTTATTCATCGATGAGCTTCACACATTAATTGGTGCAGGGGGTG
CTGAAGGTGCAATTGATGCGTCGAATATTTTAAAACCATCCCTTGCACGCGGAGAGTTGCAATGTATTGGTGCAACCACT
TTAGATGAATATCGTAAATATATTGAAAAGGATGCAGCATTAGAACGAAGATTCCAGCCAATTCAAGTTGATGAACCAAC
ACTAGAAGAGTCAACACAAATATTAAAAGGACTGCGTGATCGTTATGAAGCGCACCATCGTGTAACAATTACTGATGATG
CTATTGAGGCGGCTGTAAAACTATCAGATCGTTACATTTCTGATCGATTTTTACCGGATAAAGCGATTGACTTAATTGAT
GAAGCAGCATCAAAAGTTCGTCTAAGGTCTTACACAGCACCGCCGAACTTAAAAGAGATGGAGCAAAAACTTGAAGAAAC
ACGCAAAGAGAAGGATGCAGCTGTACAAAGTCAAGAATTTGAAAAAGCAGCATCGTTAAGAGATAGCGAGCAACGAATTC
GCGAAGAATTAGATGACTTGAAAAAGCAATGGAAAGAAAAACAAGGTCAAGAGAATTCCGAAGTTGTCACGGATGATATT
GCGATGGTTGTTTCAAGCTGGACGGGAATACCAGTAAGTAAACTTGCTGAAGAAGAAACAGATCGCTTACTTCGTATGGA
AGAAATTCTTCATAATCGAGTCATTGGTCAAAACGAGGCAGTGGAAGCTGTTTCCAAAGCAATTCGTAGAGCTAGAGCCG
GGCTTAAGGATCCAAAACGTCCGATTGGCTCGTTTATTTTCCTTGGACCTACAGGTGTCGGTAAAACAGAACTAGCTAGA
GCAGTTGCAGAATCATTATTCGGAGACGAAGATGCGATTATTCGAATCGATATGTCAGAGTATATGGAAAAGCATACAAC
GTCTCGTCTTGTCGGTTCACCACCGGGATATGTTGGCCATGACGAAGGTGGTCAATTAACGGAAAAAGTTCGTAGAAAGC
CATACTCAGTCATCTTGCTTGATGAAGTAGAGAAGGCTCACCCTGAAGTATTTAATATTCTTCTCCAAGTACTTGAAGAT
GGGTTCTTAACGGACTCAAAAGGGCGCCGTGTCGATTTCCGGAATACAGCGATCATTATGACCTCTAATGTTGGAGCTAG
TACGTTACGACAAGCGAAAAGCTTAGGATTTACAGCACAGCGAGATGGTGAAGATTATAAAGATATGAAAGGAAAAGTAA
TGGGAGAGTTAAAGAAGAGTTTCCGTCCGGAATTCTTAAACAGAATTGATGAAATCATCGTCTTCCATTCACTAGAGAAA
GATCATATTAAAGAGATCATTACGTTAATGTCAGATCAGCTGAAAAAGCGTCTCACAGAGCAAGGCATTGATTTTGAGTT
AACGCAAGCGGCGAAAGATAAAATTGCAGATGAAGGCTTTGACCCTGAATATGGTGCAAGACCATTACGTCGAGCATTGC
AAAAGCAAGTAGAGGACCGTCTCTCTGAAGAGTTATTACGAGGCACAATTTCAAAAGGTCAGAAAGTAATTATTGATGTG
AAGGATGAAGAGTTTGTCGTTACTTCGGAAGCGATGACAAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
83.784 |
100 |
0.838 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.56 |
98.649 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
45.585 |
100 |
0.469 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.346 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae D39 |
45.545 |
99.263 |
0.452 |
| clpC | Streptococcus pneumoniae Rx1 |
45.545 |
99.263 |
0.452 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.545 |
99.263 |
0.452 |
| clpC | Streptococcus mutans UA159 |
43.735 |
100 |
0.446 |
| clpE | Streptococcus mutans UA159 |
53.628 |
77.887 |
0.418 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.341 |
83.907 |
0.414 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.673 |
78.133 |
0.412 |
| clpE | Streptococcus pneumoniae Rx1 |
52.673 |
78.133 |
0.412 |
| clpE | Streptococcus pneumoniae D39 |
52.673 |
78.133 |
0.412 |
| clpE | Streptococcus pneumoniae R6 |
52.673 |
78.133 |
0.412 |