Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LDB25_RS01955 Genome accession   NZ_CP084695
Coordinates   381657..382610 (+) Length   317 a.a.
NCBI ID   WP_014416904.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJB5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376657..387610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS01930 (LDB25_01925) - 376701..378128 (+) 1428 WP_088056326.1 sensor histidine kinase -
  LDB25_RS01935 (LDB25_01930) rapC 378287..379435 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  LDB25_RS01940 (LDB25_01935) phrC 379419..379538 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LDB25_RS01945 (LDB25_01940) - 379689..379799 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  LDB25_RS01950 (LDB25_01945) - 379879..381243 (-) 1365 WP_014416903.1 aspartate kinase -
  LDB25_RS01955 (LDB25_01950) ceuB 381657..382610 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  LDB25_RS01960 (LDB25_01955) - 382600..383547 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  LDB25_RS01965 (LDB25_01960) - 383541..384299 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  LDB25_RS01970 (LDB25_01965) - 384321..385265 (+) 945 WP_012116805.1 siderophore ABC transporter substrate-binding protein -
  LDB25_RS01975 (LDB25_01970) - 385307..386731 (-) 1425 WP_014416906.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=612440 LDB25_RS01955 WP_014416904.1 381657..382610(+) (ceuB) [Bacillus velezensis strain DJB5]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=612440 LDB25_RS01955 WP_014416904.1 381657..382610(+) (ceuB) [Bacillus velezensis strain DJB5]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTTTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTGCTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539